PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA56820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | ERF | ||||||||
Protein Properties | Length: 341aa MW: 36414.5 Da PI: 10.1949 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 137 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+ +++g PKA56820.1 137 RYRGVRQRP-WGKWAAEIRDP-----HraARVWLGTFETAEAAARAYDEAAIRFRG 186 7********.**********7.....338************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence |
MSPEPVIRTL SGLNNAREMS AMVSVLTRVV SGGQRGTSSG EPVMATGALL TSRSLPSTFS 60 SATEALPWSC FTSLGGHGCA GGGMKREREE LTPDWVGYHR RLGEHGSSPG ESPSSASATV 120 PLEAEQSSAA DRGVHRRYRG VRQRPWGKWA AEIRDPHRAA RVWLGTFETA EAAARAYDEA 180 AIRFRGNRAK LNFPESARLQ QTLGSSPATR LQQRPLVRFQ SLDAASDYVE YSRLLQGTGE 240 YGSLPPTALL NRLIRSSSSM ASSSHSTLSF ASQSMARGSS FTLASSSSPL LHPLFRTPAS 300 ATGEQIVTFR QPGEGASQSR QLFPATSSTD SGDHQPPSCS G |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 8e-29 | ERF family protein |