PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56728.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Dof

Protein Properties

Length: 466aa MW: 50176.2 Da PI: 10.441

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56728.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.2e-40	261	320	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrnvPvGgg+rknk+s PKA56728.1 261 HEQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGSLRNVPVGGGCRKNKRS 320 6899******************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence
MRGPHKPPGR DKSEKGMGPT WSVLSVWEPL FRGPINSLVA ALVTTIVARV ASCAGSRRWP 60 PTQVAALTVA HAARPQAQAA ATAAADDSIR QIRPNKNATN PCAWLKNQKL LNRRKPRIEA 120 ARGPSELRLP RQRGTQCCLQ RRKRKQRKTT RPAVAASPTL FPFLFTSPSP STISPPLFLS 180 GDIADGKELL GPKLASSTWN LGGKRQWLLL LQCPSAWNLP TGSTSSIVHE DASSPSSEIL 240 PCVPPAQSPA PVAERRLRPP HEQALKCPRC DSTHTKFCYY NNYSLSQPRY FCKTCRRYWT 300 KGGSLRNVPV GGGCRKNKRS AAAGKIIKPT AVSMLAPPAP QLSYYGDGAA TDLNLSFSGA 360 QQRQNFNFLE FKYNHGFESS AGGFDFMDTK FGAVLGSSMM MGSPEIGGYG FGSSLAGDGN 420 CRGTFVDPAN AAGDFAEVER DSFGYPSGLG LWSGMINGQC GSSAAI

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence

MRGPHKPPGR DKSEKGMGPT WSVLSVWEPL FRGPINSLVA ALVTTIVARV ASCAGSRRWP  60
PTQVAALTVA HAARPQAQAA ATAAADDSIR QIRPNKNATN PCAWLKNQKL LNRRKPRIEA  120
ARGPSELRLP RQRGTQCCLQ RRKRKQRKTT RPAVAASPTL FPFLFTSPSP STISPPLFLS  180
GDIADGKELL GPKLASSTWN LGGKRQWLLL LQCPSAWNLP TGSTSSIVHE DASSPSSEIL  240
PCVPPAQSPA PVAERRLRPP HEQALKCPRC DSTHTKFCYY NNYSLSQPRY FCKTCRRYWT  300
KGGSLRNVPV GGGCRKNKRS AAAGKIIKPT AVSMLAPPAP QLSYYGDGAA TDLNLSFSGA  360
QQRQNFNFLE FKYNHGFESS AGGFDFMDTK FGAVLGSSMM MGSPEIGGYG FGSSLAGDGN  420
CRGTFVDPAN AAGDFAEVER DSFGYPSGLG LWSGMINGQC GSSAAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	147	RRKRKQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	2e-37	Dof family protein