PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA56516.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | LBD | ||||||||
Protein Properties | Length: 160aa MW: 18268.9 Da PI: 8.3652 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 115.1 | 4.6e-36 | 17 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lr+kC++dC+lapyfp +q +f +v+++FGasn++++lk++p + r +a++s + eA +r++dPvyG++++i +lq+++++++ e+ ++++ PKA56516.1 17 RCAACKFLRKKCKEDCTLAPYFPPSQVYRFSCVRRIFGASNITRMLKQVPAHLRAQAADSFASEAYWRVQDPVYGCTAIIDHLQHEIQRAQIEIWQAQA 115 6********************************************************************************************999888 PP DUF260 100 e 100 + PKA56516.1 116 Q 116 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 160 aa Download sequence |
MSGSNIFLDS TINGRRRCAA CKFLRKKCKE DCTLAPYFPP SQVYRFSCVR RIFGASNITR 60 MLKQVPAHLR AQAADSFASE AYWRVQDPVY GCTAIIDHLQ HEIQRAQIEI WQAQAQLAFY 120 KAQANLINQP ARPNKDEAYW AIEDDAMLLP DLTSFPPDLL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 5e-38 | LBD family protein |