PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA56248.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Nin-like

Protein Properties

Length: 832aa MW: 92085.5 Da PI: 6.0162

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA56248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.6	2.1e-27	563	613	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++isl +l+kyF++++kdAAk+Lgvc+T+LKriCR +GI+RWP+Rkik++ PKA56248.1 563 ENHISLCVLQKYFAGSLKDAAKNLGVCPTTLKRICRLHGISRWPSRKIKKV 613 689**********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 832 aa Download sequence
MESQTVERGK QAKQARMEVS MVTDCLTESP IRDDPSNFLG LSNFDGFNEP VSSLADDQLF 60 SSFSFSCLNS PFGTCGSLAS PGGPEEAQDS VLQNEGTSGD DFAVGERFEA QKTSMQSGSC 120 PNTEGEVRLD IVSVRSDSAE IPENGTASII QKSIGGITLS ERMLMALSLL KEFAGGGILA 180 QVWAPVMQGH NYVLSTYEQP FLLDQVFAGF REISRGFTFP TKDAPGLLPG LPGRVFISGL 240 PEWTSNVIYY NKLEYLRADY AVSHEVRGSL AVPVFDPQLS SCCAVLELVT KKEKLDFDVE 300 MENICQALQV VDLKTAKAHV LHQKPTNNQR FASAEILDVL RAACHAHMLP LALTWVPIAR 360 SSGIIRDGSG SYIQKENVLC IQESACYVND SRMLGFLRAC CEHYLVKGQG VVGKALLSNY 420 PFFYADVREY DILEYPLAHH ARKFNLQAAV AIRLRSTYTG DDDYILEFFL PVNCKGSAEQ 480 QLLLNNLLIT MRNLCRTLRT VLDAEAAEVD AKGHDTQKRE NENFRSNNVE VADVPSKGQK 540 MEFTDQSNNG SFNRIEKKRS LTENHISLCV LQKYFAGSLK DAAKNLGVCP TTLKRICRLH 600 GISRWPSRKI KKVNHSLKKI QSVIDSVQGV EGKLKCDPAT GHLLAAVTPE KLTIVTSASG 660 KDFPFPSSRG CQAGKFAENL ESNVCDSEVH MNAGVDLSGA REHSHHSMSS MTDSSSGSAS 720 SFPTFKNRSN ITASDSDKSV IFIVKATYRS DTVRFKFCPS MGCQHLYEEI GKRFRLSAET 780 YQLKYMDDEA EWVILMTDSD LLECIEVLES IDSHTMRLQI RDLPVDVQCW KQ

Sequence ? help Back to Top

Protein Sequence Length: 832 aa Download sequence

MESQTVERGK QAKQARMEVS MVTDCLTESP IRDDPSNFLG LSNFDGFNEP VSSLADDQLF  60
SSFSFSCLNS PFGTCGSLAS PGGPEEAQDS VLQNEGTSGD DFAVGERFEA QKTSMQSGSC  120
PNTEGEVRLD IVSVRSDSAE IPENGTASII QKSIGGITLS ERMLMALSLL KEFAGGGILA  180
QVWAPVMQGH NYVLSTYEQP FLLDQVFAGF REISRGFTFP TKDAPGLLPG LPGRVFISGL  240
PEWTSNVIYY NKLEYLRADY AVSHEVRGSL AVPVFDPQLS SCCAVLELVT KKEKLDFDVE  300
MENICQALQV VDLKTAKAHV LHQKPTNNQR FASAEILDVL RAACHAHMLP LALTWVPIAR  360
SSGIIRDGSG SYIQKENVLC IQESACYVND SRMLGFLRAC CEHYLVKGQG VVGKALLSNY  420
PFFYADVREY DILEYPLAHH ARKFNLQAAV AIRLRSTYTG DDDYILEFFL PVNCKGSAEQ  480
QLLLNNLLIT MRNLCRTLRT VLDAEAAEVD AKGHDTQKRE NENFRSNNVE VADVPSKGQK  540
MEFTDQSNNG SFNRIEKKRS LTENHISLCV LQKYFAGSLK DAAKNLGVCP TTLKRICRLH  600
GISRWPSRKI KKVNHSLKKI QSVIDSVQGV EGKLKCDPAT GHLLAAVTPE KLTIVTSASG  660
KDFPFPSSRG CQAGKFAENL ESNVCDSEVH MNAGVDLSGA REHSHHSMSS MTDSSSGSAS  720
SFPTFKNRSN ITASDSDKSV IFIVKATYRS DTVRFKFCPS MGCQHLYEEI GKRFRLSAET  780
YQLKYMDDEA EWVILMTDSD LLECIEVLES IDSHTMRLQI RDLPVDVQCW KQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.1	0.0	Nin-like family protein