PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA56183.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family MYB
Protein Properties Length: 308aa    MW: 33112.9 Da    PI: 6.0936
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA56183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.6e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd +l+ +v  +G+g+W+ ++++ g++R++k+c++rw +yl
       PKA56183.1 15 KGLWTPEEDAKLLAYVSNHGTGNWTNVPKRAGLKRCGKSCRLRWTNYL 62
                     678*******************************************97 PP
2Myb_DNA-binding45.12.3e-1471111446
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +T+ E+el+v +++  G++ W+ Ia+ ++ gRt++++k++w++
       PKA56183.1  71 FTPHEEELIVTLHANIGSR-WSVIASQLP-GRTDNDVKNYWNT 111
                      8******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    
MTRPPCCDEL MSVKKGLWTP EEDAKLLAYV SNHGTGNWTN VPKRAGLKRC GKSCRLRWTN  60
YLRPNLKHEG FTPHEEELIV TLHANIGSRW SVIASQLPGR TDNDVKNYWN TKLSKRLALN  120
GIDPVTHRPI ADVKESITSL QISAAATTAA SAAARRCRSP HVFANGDLRN THFANDVISP  180
TSSSSSSSTA STAANQNPIS NAGTPPPPPL PDVDWVDFLA EDASLYLEEL DAHLASPAAA  240
PASTSSTILS KAPPGDGDGG FRSTEEVSDI VQGVTASDGW SSFVDGILNR DRQLMSEFAG  300
LTPDLDLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.15e-63MYB family protein