PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA55890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | MYB | ||||||||
Protein Properties | Length: 255aa MW: 28659.8 Da PI: 7.893 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.3 | 3.5e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+lv+ ++ +G g+W++++r+ g+ R++k+c++rw +yl PKA55890.1 14 RGLWSPEEDEKLVKHITTYGHGCWSSVPRRAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.5 | 1.2e-16 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+ l+++++k G++ W+ Ia++++ gRt++++k++w++ PKA55890.1 67 RGSFSPQEENLIIELHKVIGNR-WAQIAKHLP-GRTDNEVKNYWNS 110 899*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence |
MGHHSCCNKQ KVRRGLWSPE EDEKLVKHIT TYGHGCWSSV PRRAGLQRCG KSCRLRWINY 60 LRPDLKRGSF SPQEENLIIE LHKVIGNRWA QIAKHLPGRT DNEVKNYWNS TIKKKLIAQA 120 VEGLKRAEIS NPMPCNAPQE LLPLTAFHLQ SYSYSKPEAS AETRILQLSS SHGSIWPLEN 180 PFQPMNGDLS IFSDGNDHLI NGPECIVPLM GNGPCCSGLT ECMEVLSRPS SMAEVIACDD 240 VIDNNNPFFL PHMLS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13890.2 | 8e-76 | MYB family protein |