PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA55517.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 204aa MW: 23098.2 Da PI: 8.503 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 70 | 125 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k+ +++keq + Lee F++n++++ +++e LA+klgL rqV vWFqNrRa+ k PKA55517.1 70 RQKKLRLSKEQSRLLEESFRQNHTLNPKQKEALAAKLGLRARQVEVWFQNRRARTK 125 5678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 122 | 2.9e-39 | 71 | 159 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLEesF+++++L+p++K++la +Lgl++rqv+vWFqnrRARtk+kq+E+++e+Lkr++ +l+een+rL++eveeLr+ PKA55517.1 71 QKKLRLSKEQSRLLEESFRQNHTLNPKQKEALAAKLGLRARQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREVEELRA 159 69*************************************************************************************94 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence |
MADLQLTMAM PGWSSPSSSG IDLFHFEEGG GCNVSLKDLD MNRPAREAEE EFQAGSAEEV 60 EEDDGDGGHR QKKLRLSKEQ SRLLEESFRQ NHTLNPKQKE ALAAKLGLRA RQVEVWFQNR 120 RARTKLKQTE MECEYLKRCF GSLTEENRRL QREVEELRAM RVAPPTVISP VTRRPIAASA 180 LTMCPRCQRF TTAAPPRRPP SAAT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 128 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 6e-63 | HD-ZIP family protein |