PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA55440.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family bHLH
Protein Properties Length: 273aa    MW: 30739.5 Da    PI: 9.2425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA55440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH283.9e-091111501054
                 HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 r RR+ri +++  L++l+P       +K++ a++Le+Av+Y+k L
  PKA55440.1 111 RLRRERISERIRILQQLVPGG-----TKMDTASMLEEAVRYVKFL 150
                 89*****************87.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    
MDFERIDFSA SDAEFNYLTE TMNDMDNLFA FSKLSQATLA LPAPSSFSPM ISSSTSTLGF  60
GSDEDRSSET MKDMMFCMAA LQPMRIDPER VKSRPRRNVR ISKVPQSVTA RLRRERISER  120
IRILQQLVPG GTKMDTASML EEAVRYVKFL KMQVRCMERV AATVTTPDGF QSFVCQPLEG  180
LSRSRGKISI PSPEHFLPYS RDLVHQYLSP MQPVVPCLRT NGTATRVPSP PHGGISYAVG  240
CPYRPNNPQL IQPAHSFIHS FTLLLLPLLL RFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111116RLRRER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.12e-25bHLH family protein