PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55421.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ZF-HD

Protein Properties

Length: 385aa MW: 41048.9 Da PI: 6.8245

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55421.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.9	8.6e-32	59	112	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 rY+eClkNhA+ +GghavDGCgEfmp+ geegt ++l+CaACgCHRnFHR+e++ PKA55421.1 59 NRYRECLKNHAVGIGGHAVDGCGEFMPA-GEEGTLDGLRCAACGCHRNFHRKEND 112 69***********************9.999******************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MDFDDQDEAD EEMGFPGYDP GLGNSGRAKP GAAGASGGAA GADGAGGSSS RKGAASGGNR 60 YRECLKNHAV GIGGHAVDGC GEFMPAGEEG TLDGLRCAAC GCHRNFHRKE NDGGEASPAA 120 AAPAAAGFHQ SFSPYYRTPA GYLHQHHQQQ MAAAAAAAAA AAAQHQQRPL PLALPSTSGV 180 GYGREEQEDV SMGLGGGGGV GPSSSSGKKR FRTKFTPEQK DKMLAFAERV GWRIQKHDEE 240 AVQRFCDEAS VKRHVLKVWM HNNKHTLGPK VPKMEDWVTF ELDSIIFCTE RYGSGSSVDC 300 VAGEEKVKLP ACPSMKEACG SSAILRSSCI ADVSRISRGD FILRLFRDMF AFLNVFQVYW 360 IARVYRSANM TVNFVAFVVV DEDVL

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MDFDDQDEAD EEMGFPGYDP GLGNSGRAKP GAAGASGGAA GADGAGGSSS RKGAASGGNR  60
YRECLKNHAV GIGGHAVDGC GEFMPAGEEG TLDGLRCAAC GCHRNFHRKE NDGGEASPAA  120
AAPAAAGFHQ SFSPYYRTPA GYLHQHHQQQ MAAAAAAAAA AAAQHQQRPL PLALPSTSGV  180
GYGREEQEDV SMGLGGGGGV GPSSSSGKKR FRTKFTPEQK DKMLAFAERV GWRIQKHDEE  240
AVQRFCDEAS VKRHVLKVWM HNNKHTLGPK VPKMEDWVTF ELDSIIFCTE RYGSGSSVDC  300
VAGEEKVKLP ACPSMKEACG SSAILRSSCI ADVSRISRGD FILRLFRDMF AFLNVFQVYW  360
IARVYRSANM TVNFVAFVVV DEDVL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	4e-56	ZF-HD family protein