PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA55276.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 513aa MW: 54266 Da PI: 4.9571

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA55276.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	334	376	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L PKA55276.1 334 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 376 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MLSRLSGAAW IDGAADEEED AVSWPRAAAA AAADAAGGGM GDGRGDLTLP CFKSILDDDW 60 YGAEAGGSSG DQSFAAIHAA DAGILLPPPV DSSASCSPSA VYSLDPAAHQ AFFPPKPAMS 120 SLLSAVCSNP FESGFDFAAD ASGFLPPGNT SLLLSRGAVG GGGLGFPGMQ IGCQDLLPPM 180 TGSSSVQSSG AGLNPMSFDF FENSPFLNRA KVLRPLEIFP PVGAQPTLFQ KRAATVLRQN 240 SNAMGWEKGE AETSLQGGEH EKRRRRSDEE DADDASIDGS GLNYDSEDAG FTENAKAEED 300 NNGGGATASN TNSTLTGNGD QKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM 360 DRASILGDAI EYLKELLQKI NDLHNELEST NTSMTSSSTP SFHPLTPTLP TLPCRIKEEL 420 CSSSLPSPNG QPARVEVRLR EGRAVNIHMF CARRPGLLLS TMRALDGLGL DIQQAVISCF 480 NGFALDVFRA EDLLKISCHS ILSAIKGWAC CFA

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MLSRLSGAAW IDGAADEEED AVSWPRAAAA AAADAAGGGM GDGRGDLTLP CFKSILDDDW  60
YGAEAGGSSG DQSFAAIHAA DAGILLPPPV DSSASCSPSA VYSLDPAAHQ AFFPPKPAMS  120
SLLSAVCSNP FESGFDFAAD ASGFLPPGNT SLLLSRGAVG GGGLGFPGMQ IGCQDLLPPM  180
TGSSSVQSSG AGLNPMSFDF FENSPFLNRA KVLRPLEIFP PVGAQPTLFQ KRAATVLRQN  240
SNAMGWEKGE AETSLQGGEH EKRRRRSDEE DADDASIDGS GLNYDSEDAG FTENAKAEED  300
NNGGGATASN TNSTLTGNGD QKGKKKGLPA KNLMAERRRR KKLNDRLYML RSVVPKISKM  360
DRASILGDAI EYLKELLQKI NDLHNELEST NTSMTSSSTP SFHPLTPTLP TLPCRIKEEL  420
CSSSLPSPNG QPARVEVRLR EGRAVNIHMF CARRPGLLLS TMRALDGLGL DIQQAVISCF  480
NGFALDVFRA EDLLKISCHS ILSAIKGWAC CFA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	324	342	KKKGLPAKNLMAERRRRKK
2	336	343	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	3e-97	bHLH family protein