PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54451.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB

Protein Properties

Length: 1006aa MW: 110714 Da PI: 5.2015

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54451.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.3	8.4e-19	75	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEdell +av+ + g++Wk+Ia+ ++ Rt+ qc +rwqk+l PKA54451.1 75 KGHWTPEEDELLRQAVHHYKGKNWKKIAESFQ-DRTDVQCLHRWQKVL 121 789***************************.**********986 PP
2	Myb_DNA-binding	61.6	1.7e-19	127	173	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+++++ v+q+G + W+tIa+ ++ gR +kqc++rw+++l PKA54451.1 127 KGPWTKEEDDIIIQMVQQYGQKKWSTIAQALP-GRIGKQCRERWHNHL 173 79****************************.***********97 PP
3	Myb_DNA-binding	47.8	3.2e-15	179	221	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l+++++++G++ W+ ++++ gRt++ +k++w+ PKA54451.1 179 KEAWTQEEEIVLIHGHQKYGNK-WAELTKYLP-GRTDNAIKNHWN 221 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1006 aa Download sequence
MASDKGMRMR SRNGLASAPV VSQVGITGSS AADLGDGFAE ASSSASLQDG SGGEFLAPPK 60 HLHGRATGPQ RKSTKGHWTP EEDELLRQAV HHYKGKNWKK IAESFQDRTD VQCLHRWQKV 120 LNPSLVKGPW TKEEDDIIIQ MVQQYGQKKW STIAQALPGR IGKQCRERWH NHLNPAINKE 180 AWTQEEEIVL IHGHQKYGNK WAELTKYLPG RTDNAIKNHW NSSVKKKVDS YMASGMLAKY 240 PSLAQCMPTK SINPKDHYNG LKDRLEIEDS SECSSSAPLP SCQSESEMAT NPLSLVEDFK 300 KVEASFTKDT MKSDLFVCSE QNYCSFEESH PQIASSGSLS HAAEEYGNVV SQDSLTQSDD 360 DFVKKAVLLP ISTPQKSSTS GQCLVLEEKN KLLVSNAEEF SANLSDMQLK SNFSILHPVN 420 ASHTGDLEVV ASYVSCIPLV HTSSACSNLA SCSCPVFQSP NTSEMPETPY CSSLMSVVPS 480 SFVCPSDNVE IQVLSSSLQH LRPIAGAFCS VLEPCSSLAP VPEAQVGQIQ GENEVLTEHT 540 GCRSLNEILY PEDEEKGESE KVIEIGGLSL SDEKADVDSE QFLETGTLFY EPPRIISLEF 600 PFVSCDIAPS YLQQEYSPLG IRQHMISSGP CNFWDSPCHD DSPDGILKNA AKSFILTPSI 660 MKKRQRELLS PMQNMRSDKK LGVDMNQESL FRSLIKGEAC MDDDVICDSA AERIRSINDA 720 HDTSFDLRER SGKCNMQNEN LNHTLIGNDG TCAVYNQQEK IEKGKSGAHV PSEIDSVRKE 780 IQCGRVLVEI KPNVDTCTVF PSPGSCGTKH VQHSTPVTSL RYPPSSKKPQ LALEKCSSMA 840 DSERGNLNIF ANTPNLRRGL DSPSAWKSPW FMHSFAPGAN LAFEDFKCFM SPIDRSYDAL 900 SLMKQVSEQS AVVIAEAQEI LGKGCQHLDF DTMQSIEDSL PEGIDEPGKE QENLIPMPSN 960 VLAEGRVLDF SDCVTPADET KSGRVGDSLN ASLLSNPCSR LLKTCR

Sequence ? help Back to Top

Protein Sequence Length: 1006 aa Download sequence

MASDKGMRMR SRNGLASAPV VSQVGITGSS AADLGDGFAE ASSSASLQDG SGGEFLAPPK  60
HLHGRATGPQ RKSTKGHWTP EEDELLRQAV HHYKGKNWKK IAESFQDRTD VQCLHRWQKV  120
LNPSLVKGPW TKEEDDIIIQ MVQQYGQKKW STIAQALPGR IGKQCRERWH NHLNPAINKE  180
AWTQEEEIVL IHGHQKYGNK WAELTKYLPG RTDNAIKNHW NSSVKKKVDS YMASGMLAKY  240
PSLAQCMPTK SINPKDHYNG LKDRLEIEDS SECSSSAPLP SCQSESEMAT NPLSLVEDFK  300
KVEASFTKDT MKSDLFVCSE QNYCSFEESH PQIASSGSLS HAAEEYGNVV SQDSLTQSDD  360
DFVKKAVLLP ISTPQKSSTS GQCLVLEEKN KLLVSNAEEF SANLSDMQLK SNFSILHPVN  420
ASHTGDLEVV ASYVSCIPLV HTSSACSNLA SCSCPVFQSP NTSEMPETPY CSSLMSVVPS  480
SFVCPSDNVE IQVLSSSLQH LRPIAGAFCS VLEPCSSLAP VPEAQVGQIQ GENEVLTEHT  540
GCRSLNEILY PEDEEKGESE KVIEIGGLSL SDEKADVDSE QFLETGTLFY EPPRIISLEF  600
PFVSCDIAPS YLQQEYSPLG IRQHMISSGP CNFWDSPCHD DSPDGILKNA AKSFILTPSI  660
MKKRQRELLS PMQNMRSDKK LGVDMNQESL FRSLIKGEAC MDDDVICDSA AERIRSINDA  720
HDTSFDLRER SGKCNMQNEN LNHTLIGNDG TCAVYNQQEK IEKGKSGAHV PSEIDSVRKE  780
IQCGRVLVEI KPNVDTCTVF PSPGSCGTKH VQHSTPVTSL RYPPSSKKPQ LALEKCSSMA  840
DSERGNLNIF ANTPNLRRGL DSPSAWKSPW FMHSFAPGAN LAFEDFKCFM SPIDRSYDAL  900
SLMKQVSEQS AVVIAEAQEI LGKGCQHLDF DTMQSIEDSL PEGIDEPGKE QENLIPMPSN  960
VLAEGRVLDF SDCVTPADET KSGRVGDSLN ASLLSNPCSR LLKTCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	1e-101	MYB family protein