PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA54388.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

LBD

Protein Properties

Length: 302aa MW: 33691 Da PI: 9.4339

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA54388.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.2	2.6e-28	158	259	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 aCaaCk +r+kC+k+C la+ f eq ++f +vh++FG +n++ +l+++ +e +++a +++v+eA+ r+ dPv+G++g++ k+q ql +l+ e ++l PKA54388.1 158 ACAACKKQRKKCEKQCKLAKLFSPEQGADFDAVHRVFGLKNLMAMLERVegGDELKRAARDAIVWEARQRLFDPVNGSFGLLAKMQTQLVELRRENSML 256 7**********************************************4445669***********************************999988 PP DUF260 98 kee 100 + + PKA54388.1 257 RGQ 259 766 PP

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence
MTAAQEWADT ADGIWIEGDS AITIADLHQT ARGHPPDKTM AQIANLFCAF KAYKISHVYR 60 AANRATDFVA SFSCLDDLEW PQQKDRRASL AMINLQSFQI RLILSSPSRP LSNHMRTHLP 120 EIVARRRHIF PASASLMAKG QLPPAPMPAT ETTTVRQACA ACKKQRKKCE KQCKLAKLFS 180 PEQGADFDAV HRVFGLKNLM AMLERVEGGD ELKRAARDAI VWEARQRLFD PVNGSFGLLA 240 KMQTQLVELR RENSMLRGQI MMMQHMPCSG QIGICHCRKD EGPTATAGVD RFLSKAMAPT 300 LD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	3e-12	LBD family protein