PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA54175.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 744aa MW: 81299.7 Da PI: 7.594 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.8 | 5.9e-21 | 94 | 149 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r+eL+ +l+L+ rqVk+WFqNrR+++k PKA54175.1 94 KKRYHRHTPQQIQELEALFKECPHPDEKQRQELSLRLRLENRQVKFWFQNRRTQMK 149 688999***********************************************999 PP | |||||||
2 | START | 155.3 | 4.9e-49 | 329 | 470 | 74 | 206 |
TT-SEEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--...-TTSEE-EESSEEEEEEEECTCEEE CS START 74 etlakaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe..sssvvRaellpSgiliepksnghsk 163 ++a+ +t++vis+g galqlm+aelq+lsplvp R++vf+R+++ql +g w++vdvSvd ++++p s + ++++lpSg+++++++ng+sk PKA54175.1 329 GMIARSTTTDVISTGvggsrnGALQLMQAELQVLSPLVPiREVVFLRFCKQLADGAWAVVDVSVDGNRDNPAadSVLGSKCRRLPSGCVVQDMPNGYSK 427 355699*****************************************************************87777778******************** PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++ +h+++r+l++sg+a ga++wvatl+r+ce+ PKA54175.1 428 VTWVEHAEYNDAAVHQIFRPLLRSGMALGAQRWVATLHRHCEC 470 *****************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 744 aa Download sequence |
MSFGGHFDDD YGSSGVPITA APSPIFGSAS LSLGLSNVEG HGELNRLTAA GGCSGGELDG 60 IWRNKEEEDE SRSGSDNFEA GSGDDLDLEN PRKKKRYHRH TPQQIQELEA LFKECPHPDE 120 KQRQELSLRL RLENRQVKFW FQNRRTQMKT QLERHENTIL RQEHEKLRAE NITIRDLMRN 180 PICGSCGGPA VLGEVPLEEQ QLRIENARLK DELDRVCAIA GKFLGRPISS LPLPISYPLP 240 NSSLDLAVGG NGAAFGAFSS VATAFPAVSD LGTSPLGTVI TPSRSTLAMD RSLESSMFLE 300 LALTAMDELV KLSQTGEPIW ARWADLFPGM IARSTTTDVI STGVGGSRNG ALQLMQAELQ 360 VLSPLVPIRE VVFLRFCKQL ADGAWAVVDV SVDGNRDNPA ADSVLGSKCR RLPSGCVVQD 420 MPNGYSKVTW VEHAEYNDAA VHQIFRPLLR SGMALGAQRW VATLHRHCEC LAILMSSSVP 480 NRGLSAITAA GRRSMLRLAH RMTENFCAGV CASAEGKWTR LANMARSVGE DVRVMTRQSA 540 EDPGEPPGVV LSAATSVWLP ASPHRLFEFL HDESQRSQWD ILSNGGPMLE MAHIAKGQNH 600 GNAVSLLRCE LEPKRHPDTA RDVHRRLGLD GGVRAGGCAG DAARHERRRL RLRGAAAVGL 660 RRHAGWVGSG GRGEGRAGLA ADGGVPDSGQ QPADGEADHG VGGDGEQSDI LHRAEDQGGS 720 PVRELIRERR RWRWRWRWRW RRGG |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 727 | 737 | RERRRWRWRWR |
2 | 729 | 739 | RERRRWRWRWR |
3 | 731 | 741 | RERRRWRWRWR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61150.1 | 0.0 | HD-ZIP family protein |