PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53646.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family LBD
Protein Properties Length: 262aa    MW: 27892.9 Da    PI: 8.0993
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53646.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.23.5e-3059160197
      DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                 +C++C+vlr++C+++Cvl+p++     p++q +++ +v+k+FG++ ++++l+a+pe++r+++++sl++e++ r+ +Pv Gavg++l+++++l+q+++e+
  PKA53646.1  59 SCNGCRVLRKGCSESCVLRPCLqwiesPEAQGHATVFVAKFFGRAGLTSFLSAVPESQRPALFQSLLFESCGRTVNPVTGAVGLLLSGNWHLCQSAVET 157
                 6***********************************************************************************************998 PP

      DUF260  95 all 97 
                 +l+
  PKA53646.1 158 VLR 160
                 876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MASSSLRYFP FPPSPSLISQ TAISSSITVD TVSGERSLPA TDRKFAVVGG IVNEISAMSC  60
NGCRVLRKGC SESCVLRPCL QWIESPEAQG HATVFVAKFF GRAGLTSFLS AVPESQRPAL  120
FQSLLFESCG RTVNPVTGAV GLLLSGNWHL CQSAVETVLR GGTLHPLPAG DSSEIEGDGQ  180
IYTHQRTGLS SFSASKRPKI DPVGKLPAPP CDLDLCLTPR STVSSIKEKK RPATPSMNSE  240
ESVATSAESC LDRHPKLLNL FV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.11e-69LBD family protein