PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53623.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 522aa MW: 54255.4 Da PI: 9.4313

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53623.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	68	90	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PKA53623.1 68 FVCEICNKGFQRDQNLQLHRRGH 90 89*******************88 PP
2	zf-C2H2	12.1	0.00062	144	166	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ PKA53623.1 144 WKCDKCSKKYAVQSDWKAHSKTC 166 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MPVELVRPSV MAVSNSASGD ASVSSGLEPL AAVAAPPPKK KRNLPGMPDP DAEVIALSPR 60 TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEVRKRVYV CPEPNCVHHD 120 PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS 180 RRDSFITHRA FCDALAEESA KSQTVGPTPD PANSRDNKET KAALPVALPD QQMVLPQPHL 240 QPQREPQKDA GIFPYVPPAL PPTPPSISVS SSNSSGTTAS GGSSNSGSTA ATSIFASLFA 300 SCGSAAAATR GSSFSDLIGA MSRTDRGAAA IEIPSLCLSS NSAASLLPLP PDRRQYAPAP 360 PSAQLSATAL LQKAAQMGAT ASGSSFLRGF GLSTSSSSPG AGDLPWRQDE PALLSAGLGL 420 GLPYDTGAGA AAAHGGGGVL PDIMMGSSPL FGSKPATLDF LGLGMGPAGS ATAGSFSALI 480 TSIGGGVDAY PGAPAGTYGG QHSPPAKAWD FPDRKSSSRA LM

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MPVELVRPSV MAVSNSASGD ASVSSGLEPL AAVAAPPPKK KRNLPGMPDP DAEVIALSPR  60
TLLATNRFVC EICNKGFQRD QNLQLHRRGH NLPWKLRQRT GKEVRKRVYV CPEPNCVHHD  120
PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK AHSKTCGTRE YRCDCGTLFS  180
RRDSFITHRA FCDALAEESA KSQTVGPTPD PANSRDNKET KAALPVALPD QQMVLPQPHL  240
QPQREPQKDA GIFPYVPPAL PPTPPSISVS SSNSSGTTAS GGSSNSGSTA ATSIFASLFA  300
SCGSAAAATR GSSFSDLIGA MSRTDRGAAA IEIPSLCLSS NSAASLLPLP PDRRQYAPAP  360
PSAQLSATAL LQKAAQMGAT ASGSSFLRGF GLSTSSSSPG AGDLPWRQDE PALLSAGLGL  420
GLPYDTGAGA AAAHGGGGVL PDIMMGSSPL FGSKPATLDF LGLGMGPAGS ATAGSFSALI  480
TSIGGGVDAY PGAPAGTYGG QHSPPAKAWD FPDRKSSSRA LM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-103	C2H2 family protein