PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53574.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | GRAS | ||||||||
Protein Properties | Length: 532aa MW: 57410.9 Da PI: 7.9429 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 182.5 | 3e-56 | 137 | 504 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl..fsevsPilkfshlta 98 ++lL +A a+++ +++++q+lL l+elasp+gd+++Rla+y ++ L +rl++ + ++ +a +++ ++ +++ +l+ l f+e+sP++ f + +a PKA53574.1 137 EQLLNPFAAAIDAANTSRVQHLLYVLQELASPTGDANHRLAFYGLQSLTRRLSSAGLGITAAAAATVATYATTEPRLFRSALikFHEISPWFAFPNCLA 235 68999*************************************************999999988777776555555555544468*************** PP GRAS 99 NqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakrledle 190 N+ Il a++++ + + +iD ++s+G+QWp+Ll+aLa Rp+g+p +R+T+v+++++ + + + L ++A++++++f+ + ++l + PKA53574.1 236 NSSILAAAASAgtdTSLRVIDAGVSHGVQWPTLLEALARRPGGTPkIVRLTVVKDEATApfaAAPAGYDFAPHLLRYAKSIDLNFRVDQT--EALPAA- 331 *******9988777899************************8888689*******988899999999****************9998872..333333. PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nse.....sFlerflealeyysalfdsleaklpreseeri 283 + r+ ++E++++++++ r+ r+ +L++++++ P++vv++e + +s+ ++ +f + e+++++++s++a + + r PKA53574.1 332 AAAKRTAREETVVICSQMWAGRV----------RTGFLRAMREMDPDLVVLSETGEGMiGSGegdrvGLAGGFGRRAEVMWKFLESTSAAF----KGRE 416 33335566777777776655555..........468*****************984443554566669*******************8886....7777 PP GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 Er++++ e+ ++ e +e+Wrer+e GF + +++e+a++ ++llrk++ ++++r + + l Wk++p++++S W+ PKA53574.1 417 CEERRVMEGEAARILDEWDGE----WAGKERWRERMEGEGFMEERIGEEAVEAGRALLRKYDgNWEMRAGGAAAGVGLWWKGQPVTFCSLWK 504 777777777788887766555....78999********************************888899999999999**************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 532 aa Download sequence |
MDWLEDSISF LPNFLDDSYG VPEEIAQCDW WPQDQHQAHF PTHFSETIAA VAAVAAAPAA 60 TALDPLPGTP KSEFSKKRKL PANPSAGQRR RIASGSEGHG ENAENRKSQL GGGKKGYGKG 120 SGGNSGGSAS KEARWAEQLL NPFAAAIDAA NTSRVQHLLY VLQELASPTG DANHRLAFYG 180 LQSLTRRLSS AGLGITAAAA ATVATYATTE PRLFRSALIK FHEISPWFAF PNCLANSSIL 240 AAAASAGTDT SLRVIDAGVS HGVQWPTLLE ALARRPGGTP KIVRLTVVKD EATAPFAAAP 300 AGYDFAPHLL RYAKSIDLNF RVDQTEALPA AAAAKRTARE ETVVICSQMW AGRVRTGFLR 360 AMREMDPDLV VLSETGEGMI GSGEGDRVGL AGGFGRRAEV MWKFLESTSA AFKGRECEER 420 RVMEGEAARI LDEWDGEWAG KERWRERMEG EGFMEERIGE EAVEAGRALL RKYDGNWEMR 480 AGGAAAGVGL WWKGQPVTFC SLWKPAKKAS AAMPTAARQQ KMKHSPLFLS PP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 70 | 79 | PKSEFSKKRK |
2 | 76 | 91 | KKRKLPANPSAGQRRR |
3 | 77 | 92 | KKRKLPANPSAGQRRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-67 | GRAS family protein |