PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53513.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | GRAS | ||||||||
Protein Properties | Length: 622aa MW: 67215.6 Da PI: 5.0412 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 457 | 1.2e-139 | 254 | 616 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 lv++L++cAeav++++ e a+ +++++s la ++g +m+++a +f+eALa+r++r ly +s s + + + f+e +P+lkf+h+taN PKA53513.1 254 LVHALMACAEAVQEENYEVADIIVNQISMLAPSQGGAMRKVAGFFAEALARRIYR----LYPRPDCSLGS----AFSDILQMHFYESCPYLKFAHFTAN 344 689****************************************************....66444444443....333334445**************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+ +++++++l+++g+rLa++A++++v+fe++ +va++l+dle+ +L+ + PKA53513.1 345 QAILEAFAGCRRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGFGPLQPDNTDALQQVGWRLAQLADTIHVDFEYRGFVANSLTDLEPYMLESDD 443 *************************************************************************************************** PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 gE++aVn+vl+ hrll+++++ e+ vL +vk ++P++v++veqea+hn++sF erf+eal+yys++fdsle +++ +++++ +++++lgr+i+nv PKA53513.1 444 GEVVAVNSVLEFHRLLAQPGAFEK----VLATVKAVKPRIVTIVEQEANHNGSSFTERFTEALHYYSTMFDSLEGGFGGGEQQDQLMSEVYLGRQICNV 538 ************************....*********************************************************************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 vacega+r+erhetle+Wr rl aGF +v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr PKA53513.1 539 VACEGAQRTERHETLEQWRGRLAGAGFAAVHLGSNAFKQASMLLALFAgGDGYRVEEKEGCLTLGWQTRPLIATSAWR 616 *****************************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence |
MMKREHVESG GGRGYNPPAQ SEVEWKGKMR GTQDESDTGM DELLAALGYK VKSSDMAEVA 60 QKLEQLEMAM GSSAAPDDVL LNHLASDTVH YNPSDLSNWL ESMLSELSPP PPPLPTAEIH 120 RSSGFDLPPA AISAHSSPAE TTLGSTDSSG VTSVDFPSLP THKLPPDFAH CPVNGGGNRD 180 DYGSDLRQME SRSRDHKRMR TSSTSSSSRG GSGGSVLAPA APAIGCVSTS GCGAEVSSAK 240 PVVMVDTQEA GIRLVHALMA CAEAVQEENY EVADIIVNQI SMLAPSQGGA MRKVAGFFAE 300 ALARRIYRLY PRPDCSLGSA FSDILQMHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVI 360 DFSMKQGMQW PALMQALALR PGGPPSFRLT GFGPLQPDNT DALQQVGWRL AQLADTIHVD 420 FEYRGFVANS LTDLEPYMLE SDDGEVVAVN SVLEFHRLLA QPGAFEKVLA TVKAVKPRIV 480 TIVEQEANHN GSSFTERFTE ALHYYSTMFD SLEGGFGGGE QQDQLMSEVY LGRQICNVVA 540 CEGAQRTERH ETLEQWRGRL AGAGFAAVHL GSNAFKQASM LLALFAGGDG YRVEEKEGCL 600 TLGWQTRPLI ATSAWRLAGD AL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14920.1 | 0.0 | GRAS family protein |