PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA53513.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 622aa    MW: 67215.6 Da    PI: 5.0412
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA53513.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4571.2e-1392546161374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 lv++L++cAeav++++ e a+ +++++s la ++g +m+++a +f+eALa+r++r    ly    +s  s    + +   +  f+e +P+lkf+h+taN
  PKA53513.1 254 LVHALMACAEAVQEENYEVADIIVNQISMLAPSQGGAMRKVAGFFAEALARRIYR----LYPRPDCSLGS----AFSDILQMHFYESCPYLKFAHFTAN 344
                 689****************************************************....66444444443....333334445**************** PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                 qaIlea++g++rvH+iDf+++qG+QWpaL+qaLa Rp+gpps+R+Tg+g+ +++++++l+++g+rLa++A++++v+fe++ +va++l+dle+ +L+ + 
  PKA53513.1 345 QAILEAFAGCRRVHVIDFSMKQGMQWPALMQALALRPGGPPSFRLTGFGPLQPDNTDALQQVGWRLAQLADTIHVDFEYRGFVANSLTDLEPYMLESDD 443
                 *************************************************************************************************** PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 gE++aVn+vl+ hrll+++++ e+    vL +vk ++P++v++veqea+hn++sF erf+eal+yys++fdsle +++  +++++ +++++lgr+i+nv
  PKA53513.1 444 GEVVAVNSVLEFHRLLAQPGAFEK----VLATVKAVKPRIVTIVEQEANHNGSSFTERFTEALHYYSTMFDSLEGGFGGGEQQDQLMSEVYLGRQICNV 538
                 ************************....*********************************************************************** PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 vacega+r+erhetle+Wr rl  aGF +v+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaWr
  PKA53513.1 539 VACEGAQRTERHETLEQWRGRLAGAGFAAVHLGSNAFKQASMLLALFAgGDGYRVEEKEGCLTLGWQTRPLIATSAWR 616
                 *****************************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    
MMKREHVESG GGRGYNPPAQ SEVEWKGKMR GTQDESDTGM DELLAALGYK VKSSDMAEVA  60
QKLEQLEMAM GSSAAPDDVL LNHLASDTVH YNPSDLSNWL ESMLSELSPP PPPLPTAEIH  120
RSSGFDLPPA AISAHSSPAE TTLGSTDSSG VTSVDFPSLP THKLPPDFAH CPVNGGGNRD  180
DYGSDLRQME SRSRDHKRMR TSSTSSSSRG GSGGSVLAPA APAIGCVSTS GCGAEVSSAK  240
PVVMVDTQEA GIRLVHALMA CAEAVQEENY EVADIIVNQI SMLAPSQGGA MRKVAGFFAE  300
ALARRIYRLY PRPDCSLGSA FSDILQMHFY ESCPYLKFAH FTANQAILEA FAGCRRVHVI  360
DFSMKQGMQW PALMQALALR PGGPPSFRLT GFGPLQPDNT DALQQVGWRL AQLADTIHVD  420
FEYRGFVANS LTDLEPYMLE SDDGEVVAVN SVLEFHRLLA QPGAFEKVLA TVKAVKPRIV  480
TIVEQEANHN GSSFTERFTE ALHYYSTMFD SLEGGFGGGE QQDQLMSEVY LGRQICNVVA  540
CEGAQRTERH ETLEQWRGRL AGAGFAAVHL GSNAFKQASM LLALFAGGDG YRVEEKEGCL  600
TLGWQTRPLI ATSAWRLAGD AL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.10.0GRAS family protein