PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53510.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 286aa MW: 32424.7 Da PI: 9.5819

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53510.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	142.9	2.5e-44	60	195	2	134
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...seceaesssssasnsssg.kaaksaak 96 +++kdrhski+T++g+RdRR+Rls+++a++fFdLqd LGfdk+skt++WLl+++k aik+l++ +++s+ sece+++s s+++ +++ + + ++k PKA53510.1 60 PARKDRHSKIYTAQGPRDRRMRLSLDVARKFFDLQDLLGFDKASKTVQWLLNMSKSAIKQLVSAGAKSEgssSECEEDMSATSDNKRKAQaEVPRVDTK 158 689***********************************************************55555433788555555555544444244444446 PP TCP 97 skksqksaasalnlakesrakarararertrekmrikn 134 +k++++++ ++akesrakar+rarert k++++ PKA53510.1 159 GKRKPRPPF-PAKVAKESRAKARERARERTLGKKMMQA 195 666666666.788999************99998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence
MFTNTNDPYY TVEKNGIQSF FPFSPPLHQL EGQLIHDIFV SPTETAPKAA PTEKAARRRP 60 ARKDRHSKIY TAQGPRDRRM RLSLDVARKF FDLQDLLGFD KASKTVQWLL NMSKSAIKQL 120 VSAGAKSEGS SSECEEDMSA TSDNKRKAQA EVPRVDTKGK RKPRPPFPAK VAKESRAKAR 180 ERARERTLGK KMMQAVAINC SIQEDSSSHD RKSSLEMVEE RCSTSPIRFK EGDPNRGSSS 240 ATMFEYVQTV EKLLEEQWEM SFSENDMDER VLLGDLHLHA GLFDHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-26	TCP family protein