PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA53493.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | GRAS | ||||||||
Protein Properties | Length: 494aa MW: 52966.2 Da PI: 5.2163 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 288.3 | 2e-88 | 98 | 476 | 1 | 373 |
GRAS 1 lvelLlecAeavss.gdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 lv+lL+++Aea++ + +la+ +Larl+e a+ + + m+Rl+++ft AL + l + lpp +++ sse++aa++l++++sP++kf PKA53493.1 98 LVHLLMAAAEAIAGcQGSQLAHVILARLNESlhlplAAGEPSGMERLTSHFTVALWRLLRD-------GLPPADDE-LCSSEVVAAFELLQDLSPYVKF 188 68***********967788**********98766444444579************988887.......66666664.669999**************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa.sRpegpp.slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakr 185 +hltaNqaI eav ge+r+Hi+Dfdi++G+QWp+L+qaL ++ +pp +lRiT+v ++ ++++ etg+rLa fA+++g+pf+f+ + PKA53493.1 189 GHLTANQAIIEAVVGERRIHIVDFDIMEGVQWPSLMQALVtMKNVPPPaHLRITAVTRAGGRrrsptAATSVGETGRRLAAFAASIGLPFSFRQCRLEP 287 ***************************************9556666667********9654478888999************************9999* PP GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.......adhnsesFlerflealeyysalfdsleaklpr 277 ++++ + +v +gEa++ n++l+ + +s+++ ++L l ++vv++ve+e + +++ F+ rf+e + ysa++dslea++p+ PKA53493.1 288 GGSFRPASVKVVRGEAVVFNCALHPPHQRYHSAATVG---SFLAGAAALGARVVTLVEEEgtggcagVGEEEKGFVWRFMEEMLRYSAILDSLEAGFPE 383 **********************987666655655555...8*******************66554333335569************************* PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaW 373 e+ +r +vEr++l+++i +v + ++ r+ ++ W+e++++aGF+ v +s + qaklll ++ +gy +ee+ ++ l+l Wk+rpLv +S+W PKA53493.1 384 EKTARETVERVILAPRIAGAVDVAYRW---RNDWVAGWSEWMSAAGFRRVVMSAANHWQAKLLLGLFN-EGYGIEEDnENKLLLRWKSRPLVGASVW 476 ***************************...888899********************************.9*****98456788************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence |
MAEVSELLFP AWTSDYIITA PADKPPAVGF SPFSCSPEAM DWLGPSAPDV FGYAESSPET 60 ADHWSSAATS SSTSAVGTPA DASLAGSCDG DDEKGQRLVH LLMAAAEAIA GCQGSQLAHV 120 ILARLNESLH LPLAAGEPSG MERLTSHFTV ALWRLLRDGL PPADDELCSS EVVAAFELLQ 180 DLSPYVKFGH LTANQAIIEA VVGERRIHIV DFDIMEGVQW PSLMQALVTM KNVPPPAHLR 240 ITAVTRAGGR RRSPTAATSV GETGRRLAAF AASIGLPFSF RQCRLEPGGS FRPASVKVVR 300 GEAVVFNCAL HPPHQRYHSA ATVGSFLAGA AALGARVVTL VEEEGTGGCA GVGEEEKGFV 360 WRFMEEMLRY SAILDSLEAG FPEEKTARET VERVILAPRI AGAVDVAYRW RNDWVAGWSE 420 WMSAAGFRRV VMSAANHWQA KLLLGLFNEG YGIEEDNENK LLLRWKSRPL VGASVWAAPA 480 PSSGECGRLG LFPC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-109 | GRAS family protein |