PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53479.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

SRS

Protein Properties

Length: 314aa MW: 33179.8 Da PI: 8.4204

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53479.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	218.6	1.3e-67	92	255	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrel............kskkqsalss 88 +g++sCqdCGnqakkdC+h+RCRtCCksrgf+C thvkstWvpa+krrerqqqla+a+++ ++ + ++a++ ++r k ++ ++s+ PKA53479.1 92 VGGMSCQDCGNQAKKDCVHMRCRTCCKSRGFQCPTHVKSTWVPASKRRERQQQLASAAASLQHPQqHQASPTHHRAGgsavaigvgeasKRPREVSSSR 190 6899************************************************998877666552444444444446777766665422222223333 PP DUF702 89 tklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 ++ ++s ++ s+P+evss+avfrcvrvs +d++ ++aYqtavsigGhvfkGiLydqG+e PKA53479.1 191 LLTTATTSGGAEKALSFPAEVSSPAVFRCVRVSPMDEAAGQMAYQTAVSIGGHVFKGILYDQGPE 255 3333444444555666*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence
MSRFTLGGDH SQQHRAGEEE DEGVPPENLF LYSAGGGARG FELWQHHQRQ QQQQHQLYSA 60 STSGTLLAFG GAGGADELIV GGHSRSGNRG SVGGMSCQDC GNQAKKDCVH MRCRTCCKSR 120 GFQCPTHVKS TWVPASKRRE RQQQLASAAA SLQHPQQHQA SPTHHRAGGS AVAIGVGEAS 180 KRPREVSSSR LLTTATTSGG AEKALSFPAE VSSPAVFRCV RVSPMDEAAG QMAYQTAVSI 240 GGHVFKGILY DQGPEYLQHP AGESSSSPAT TTPFIASAGA ATTVGLLPDP SSLYSTPLSA 300 FMAGTQFFPH HPRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75520.1	2e-59	SRS family protein