PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA53235.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 279aa MW: 30625 Da PI: 10.6242 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 250.2 | 1.3e-76 | 62 | 279 | 86 | 301 |
GAGA_bind 86 lvenslasalpvgvqvlsgtksidslqqlse....pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180 s++++ ++ + l+ +k i++l+ +s + ++ ++++++ e+ +++ pi ++ ++++++++ k+++ +k+ + k++kk ++ ++k+ PKA53235.1 62 SEASSMNFSWVPQRNFLQPAKAINHLHATSAplssEMINVPSIPISTENAVQNGPIDAKPIKSRKQSSSAKKANRIATKVLRPKEPKKPPSGATRKKVG 160 334445566667778888888888888866566645566677789999999999999999999998888888888999999999999966555443333 PP GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279 ++ + k+ekks++ + +g+ +D s++PvPvCsCtG++rqCY+WG+GGWqS+CCtt+iS yPLP+s r+gaR+agrKmS ga+ klL++La eG+dl PKA53235.1 161 ST--SMGKREKKSQENSFDGIMIDFSGVPVPVCSCTGVPRQCYRWGTGGWQSSCCTTNISEYPLPMSLSRPGARLAGRKMSIGAYGKLLQRLAVEGHDL 257 33..5789******************************************************************************************* PP GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301 s +vDLk+hWA+HGtnkfvti+ PKA53235.1 258 SYAVDLKNHWARHGTNKFVTIK 279 *********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence |
MDGKGRLNTR NWEFMDHRLS ESMLKPTLGV SIPENNVSGY QASFLKIGAY SDRSTVIGEH 60 HSEASSMNFS WVPQRNFLQP AKAINHLHAT SAPLSSEMIN VPSIPISTEN AVQNGPIDAK 120 PIKSRKQSSS AKKANRIATK VLRPKEPKKP PSGATRKKVG STSMGKREKK SQENSFDGIM 180 IDFSGVPVPV CSCTGVPRQC YRWGTGGWQS SCCTTNISEY PLPMSLSRPG ARLAGRKMSI 240 GAYGKLLQRL AVEGHDLSYA VDLKNHWARH GTNKFVTIK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35550.3 | 7e-61 | BBR-BPC family protein |