PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA53166.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 310aa MW: 34316.9 Da PI: 5.2909

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA53166.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.4e-14	109	160	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + +K + a+i A++++k+L+ PKA53166.1 109 QRMTHIAVERNRRKQMNEYLAVLRSLMPPS---YVQKGDQASIIGGAINFVKELE 160 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MALEAVVYPQ DLLGYSVKEM YGFGGGSGSW GWELDPGLVE EEKTEGLYGN WEASCSSAAL 60 GFEDWDVNVV SPSPELEVAP TEAAAAASGG RRKRRRTKSS KNKEEVENQR MTHIAVERNR 120 RKQMNEYLAV LRSLMPPSYV QKGDQASIIG GAINFVKELE QLLQSLEVHK QLKEQEENRV 180 EHLSVTTPLA RFFTFPQYSS THTAGAVAGE PADKTPANPS AVANIEVTMV ENHANLKVLT 240 RRRPKQLLKL VVGLQNLRLT TLHLNVTTVE PMVLYSFSLK VEEDCQLNSV NEIAAAVNQM 300 VGKIEEETGF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	92	96	RKRRR
2	92	97	RKRRRT
3	110	121	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-82	bHLH family protein