PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52990.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 431aa MW: 47200.6 Da PI: 6.8556

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52990.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	4.9e-09	252	300	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq PKA52990.1 252 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 300 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence
MGDKEKFGLG KRSVDSWQFN SSEQSDPLVS FSHGLWNQPA NTHCLSFSDA QAASTPSSTS 60 GKAVPMSWDP SDSMQKVGFF LSGIGSGGLP PGLSPLPADT GFIERAARFS CFSGEANPFI 120 VCETMNCYSN PSNAIAGAQM PQNEAKSNNS GSPVNEQGEK ESNETSEPGF SGEEAREEFL 180 KKRKRINQEK RSDQAQVAAQ SHSDASKEAI DNKQKAEKRS TAKSSGNYVK ESGEAPKEDY 240 IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS KVTGKAVMLD EIINYVQSLQ 300 RQVEFLSMKL AAVNPRMEFN IESLLTKDLL HSRSGSSSAI SIPPDLIHHQ LNPSHQGLVQ 360 VGFPGVVSPI DAFRRALNVQ LPSTSGYKEA QQQMPNAWDD ELHNVFQMTY GSNPTLKTQD 420 LNGMPRDGFP L

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence

MGDKEKFGLG KRSVDSWQFN SSEQSDPLVS FSHGLWNQPA NTHCLSFSDA QAASTPSSTS  60
GKAVPMSWDP SDSMQKVGFF LSGIGSGGLP PGLSPLPADT GFIERAARFS CFSGEANPFI  120
VCETMNCYSN PSNAIAGAQM PQNEAKSNNS GSPVNEQGEK ESNETSEPGF SGEEAREEFL  180
KKRKRINQEK RSDQAQVAAQ SHSDASKEAI DNKQKAEKRS TAKSSGNYVK ESGEAPKEDY  240
IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCS KVTGKAVMLD EIINYVQSLQ  300
RQVEFLSMKL AAVNPRMEFN IESLLTKDLL HSRSGSSSAI SIPPDLIHHQ LNPSHQGLVQ  360
VGFPGVVSPI DAFRRALNVQ LPSTSGYKEA QQQMPNAWDD ELHNVFQMTY GSNPTLKTQD  420
LNGMPRDGFP L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	5e-73	bHLH family protein