PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52915.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 1003aa MW: 110991 Da PI: 6.8534

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52915.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	70.5	2.2e-22	106	207	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f+k+lt sd++++g +++p++ ae++ ++++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F +d + +l PKA52915.1 106 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsKQPP--AQELQARDLHDNLWNFRHIYRGQPKRHLLTTGWSLFVSGKRLVAGDSVIFVRD--AKSQL 200 99***************************844343..359**********************************************54..45557 PP EEEEE-S CS B3 93 vvkvfrk 99 +++++r+ PKA52915.1 201 LMGIRRA 207 9999986 PP
2	Auxin_resp	115.1	6.4e-38	232	315	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++++s F+v+YnPras+seFvv+++k++ka++ +++s+GmRf+m+feted rr++Gt+ g+sd+dp++W+nS+Wr+L+ PKA52915.1 232 AAHAVTNNSSFTVFYNPRASPSEFVVPLAKYNKAVYaSQISLGMRFRMMFETEDLGIRRYMGTILGISDFDPTKWKNSQWRNLQ 315 79*******************************989******************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1003 aa Download sequence
MNSELWHACA GPLVALPPAG TLVVYFPQGH SEQVASTLQK CADVPNYPNL PSKLICFLQN 60 ITLHADAETD EVYAHMKLQP VNAHDREALL ASDVTLKVNK PQIEFFCKTL TASDTSTHGG 120 FSVPRRAAEK IFPPLDFSKQ PPAQELQARD LHDNLWNFRH IYRGQPKRHL LTTGWSLFVS 180 GKRLVAGDSV IFVRDAKSQL LMGIRRANRQ LANVSSSVLS SDSMHIGILA AAAHAVTNNS 240 SFTVFYNPRA SPSEFVVPLA KYNKAVYASQ ISLGMRFRMM FETEDLGIRR YMGTILGISD 300 FDPTKWKNSQ WRNLQVGWDE CASGERRDRV SIWEIEPVMA PFFICPPPIF SIKRPRGIGM 360 QDDETSEMEN LFKRALPWLG EEVCIKDPES QNTVMPGLSL IQWLNMQQNC NSVLPNINLQ 420 PDGIRPLSGS LQNLGQTDSS NLSGLQGQYL QHTNVEFNAS SLLQSQPLVQ ASDSSMLLNQ 480 SGSLYSTQQS LQDMKTNLVN QTCAVNQILT QFSQPQSLVE NLAKQQQVLS TKQNGMPILL 540 SDQGNQQVSL AANQIQLQLL QNLQQRKQVL MSQSIMQRDT QKPNISLEVS KQHLANSQQL 600 NSISQQCLKS THSMQLPRSL HDQVTSKIQC QQSMLSELPG TSNPTTVATS CSLADGVAHS 660 GLPSFTTSTL ANCTVISEPN ISHNSSTMIT EKTTQPVILS SNSLADMVTR SNFFGNNARS 720 IINHQKHTVS FAGEHLMDAG VSGTNFCMRT QPEPSCSAAS TYLCQTERLL QQNFASLSQS 780 TILKTGVLDN NVVQVNSTRN NAPIHVNPAG LPICTNFLLK DRIDSGLSRG NVLGNNCVGK 840 DVQQEVSSSV TSQSFGVPEM AFESIDSTID ENCFLPQNAW APTPQLQPMR TYTKVYKRGA 900 VGRSIDITRY LGYNELRHDL ARMFSLEGQL EDRHKVGWKL VYVDHENDVL LVGDDPWEEF 960 VNCVRCIRIL SPQEVQQMSL DGDLESKLFS NQAGSSTTGG SVI

Sequence ? help Back to Top

Protein Sequence Length: 1003 aa Download sequence

MNSELWHACA GPLVALPPAG TLVVYFPQGH SEQVASTLQK CADVPNYPNL PSKLICFLQN  60
ITLHADAETD EVYAHMKLQP VNAHDREALL ASDVTLKVNK PQIEFFCKTL TASDTSTHGG  120
FSVPRRAAEK IFPPLDFSKQ PPAQELQARD LHDNLWNFRH IYRGQPKRHL LTTGWSLFVS  180
GKRLVAGDSV IFVRDAKSQL LMGIRRANRQ LANVSSSVLS SDSMHIGILA AAAHAVTNNS  240
SFTVFYNPRA SPSEFVVPLA KYNKAVYASQ ISLGMRFRMM FETEDLGIRR YMGTILGISD  300
FDPTKWKNSQ WRNLQVGWDE CASGERRDRV SIWEIEPVMA PFFICPPPIF SIKRPRGIGM  360
QDDETSEMEN LFKRALPWLG EEVCIKDPES QNTVMPGLSL IQWLNMQQNC NSVLPNINLQ  420
PDGIRPLSGS LQNLGQTDSS NLSGLQGQYL QHTNVEFNAS SLLQSQPLVQ ASDSSMLLNQ  480
SGSLYSTQQS LQDMKTNLVN QTCAVNQILT QFSQPQSLVE NLAKQQQVLS TKQNGMPILL  540
SDQGNQQVSL AANQIQLQLL QNLQQRKQVL MSQSIMQRDT QKPNISLEVS KQHLANSQQL  600
NSISQQCLKS THSMQLPRSL HDQVTSKIQC QQSMLSELPG TSNPTTVATS CSLADGVAHS  660
GLPSFTTSTL ANCTVISEPN ISHNSSTMIT EKTTQPVILS SNSLADMVTR SNFFGNNARS  720
IINHQKHTVS FAGEHLMDAG VSGTNFCMRT QPEPSCSAAS TYLCQTERLL QQNFASLSQS  780
TILKTGVLDN NVVQVNSTRN NAPIHVNPAG LPICTNFLLK DRIDSGLSRG NVLGNNCVGK  840
DVQQEVSSSV TSQSFGVPEM AFESIDSTID ENCFLPQNAW APTPQLQPMR TYTKVYKRGA  900
VGRSIDITRY LGYNELRHDL ARMFSLEGQL EDRHKVGWKL VYVDHENDVL LVGDDPWEEF  960
VNCVRCIRIL SPQEVQQMSL DGDLESKLFS NQAGSSTTGG SVI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein