PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52859.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

CO-like

Protein Properties

Length: 270aa MW: 29127.1 Da PI: 7.9413

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52859.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23	1.7e-07	59	102	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C+ +e +++ C+ + lC++C +H+ H++ p PKA52859.1 59 LMCDVCEAVPAIVTCKADAAALCASCDADIHSAniiasrHERLP 102 68*****************************6688888898877 PP
2	CCT	63.9	5e-22	205	248	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+ Krk+R+FeKkirYesRKa+Ae RpR+KGrF+k++ PKA52859.1 205 REARVTRYRAKRKSRRFEKKIRYESRKAYAEVRPRIKGRFAKRT 248 9****************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MWTPPSSPIA MLQTKAGCPE LAEEGMAFTE RDAFRQLGVD GSTCGFAMTV AQPLQQAALM 60 CDVCEAVPAI VTCKADAAAL CASCDADIHS ANIIASRHER LPLAPLRHQA ASFSGEPPEN 120 PWLMVDHESF FVQDLDYGFV VDEAAVAGGG RRRTPAFGGC VEIDFTRPNA SLTSHSVTLS 180 SEGSGGDVSK PCGESFGAST AAMDREARVT RYRAKRKSRR FEKKIRYESR KAYAEVRPRI 240 KGRFAKRTAG EPLVKWVYST PASAGTGLLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	1e-25	CO-like family protein