PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA52809.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 421aa    MW: 47544.1 Da    PI: 7.1605
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA52809.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS377.61.6e-115293972370
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl.fsevsPilkfshlta 98 
                 ++lL++cAe +++ dl +a+++++ ls  +sp gd+  R+++ ft+AL+ ++ r   +l + l ++ +++  +++e++++  l +++++P+l+f+hlta
  PKA52809.1  29 RQLLIRCAELIHHADLPAARRAISLLSAASSPFGDSADRIVHQFTRALSLQVDR--LSLQSPLsTSFPSAAGDTDEAIQSSYLhLNQITPFLRFAHLTA 125
                 689**************************************************9..4444444222233333466666655556*************** PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl......vakrledl 189
                 NqaIleav+g++r+Hi+Dfd s+G+QWp+Llqa+a+R+  ++pps+RiTg g     + + l++t++rL+ fA++l++pf+f++l       +++ ++ 
  PKA52809.1 126 NQAILEAVDGHRRIHILDFDTSHGVQWPPLLQAIADRSdpSDPPSIRITGTGT----DMDVLRRTAHRLHFFANSLNLPFHFHPLlvpsslPTSAANST 220
                 *************************************97788***********....***************************986665444566777 PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 ++ ++++++gE+laVn+v+ lh+l +++ +     +++L+ ++ l+P vv+++e+ea+hns+ Fl+rf+eale+y+++f+slea+lp++s+er++vEr+
  PKA52809.1 221 SFASFQLHSGETLAVNCVFFLHKLIKNEPDCYRDVRSFLRSIRALNPAVVTMAEREASHNSPAFLQRFIEALEHYTVVFESLEATLPPTSRERMVVERV 319
                 899999999*****************99999999***************************************************************** PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                 +lgrei  vva e +      e++ekW+e++++aG++++pls +a++qa+lllr ++ s+gy+++  ++s +lgW+++pL+sv
  PKA52809.1 320 WLGREIAAVVAGEDRF-----ERFEKWEEMMRAAGLTAAPLSPFAVSQARLLLRLHYpSEGYQLQVVRDSCFLGWQTKPLFSV 397
                 **********987664.....8899*******************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MLSSLNSREE GEQDPHPLRR CSSPYPSPRQ LLIRCAELIH HADLPAARRA ISLLSAASSP  60
FGDSADRIVH QFTRALSLQV DRLSLQSPLS TSFPSAAGDT DEAIQSSYLH LNQITPFLRF  120
AHLTANQAIL EAVDGHRRIH ILDFDTSHGV QWPPLLQAIA DRSDPSDPPS IRITGTGTDM  180
DVLRRTAHRL HFFANSLNLP FHFHPLLVPS SLPTSAANST SFASFQLHSG ETLAVNCVFF  240
LHKLIKNEPD CYRDVRSFLR SIRALNPAVV TMAEREASHN SPAFLQRFIE ALEHYTVVFE  300
SLEATLPPTS RERMVVERVW LGREIAAVVA GEDRFERFEK WEEMMRAAGL TAAPLSPFAV  360
SQARLLLRLH YPSEGYQLQV VRDSCFLGWQ TKPLFSVEQF NKPNILKQWE ELVRRESMKR  420
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-107GRAS family protein