PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52460.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 607aa MW: 65636.1 Da PI: 6.7292

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52460.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52.2	1.6e-16	224	312	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++ + +L++a++e+ +l+rg+l++ +We+v+ + ++++ +s +qCk+k +nl+kryk + ++ +++ + ++s++p+f+++e PKA52460.1 224 EWSDSAIGCLLDAYSEKYIQLNRGNLRGRDWEDVATTVsercEKQKSGKSVEQCKNKVDNLKKRYKVECQRISSG-NLAVSHWPWFKKME 312 5*****************************99887766668899999*************999999998.88999******8 PP

Sequence ? help Back to Top
Protein Sequence Length: 607 aa Download sequence
MRHAGSGNPN PNPNADAMPM ASCDDDFALL GDEAQSQAHS QQQASAAVAA AAAAAAASVV 60 SFSTHRYMSK AAVPIHARSL PISSIASPKK GQISAIGEDE DHEGYGEAFT QTEVNHNHCF 120 ASDGHGSNPF VPPQPPENDD ADGDTESDRK FHAAAAVAST SHHHHHQQQE QQQQYASRLD 180 PKRNERDELS DGESPYGYNT GSKRSRHSSA APSSSGDYRK DREEWSDSAI GCLLDAYSEK 240 YIQLNRGNLR GRDWEDVATT VSERCEKQKS GKSVEQCKNK VDNLKKRYKV ECQRISSGNL 300 AVSHWPWFKK MEQIVGSSSS KAAPEEDRAV AVGDSSPAAK QMKRYPVNSP GSANLTNNFK 360 LKSLSNPRWK RVVLKISGVA LAGTGPQNVD PKVMMLIARE VGMANRVGVE AAIVVGGRNF 420 FCGDTWIAAT VTDRATTYQI GMMASAMNAI LLQASFEKIG IDARVQTAFT MQEIAEPYIR 480 RRAVRHLEKG RVVIFGGIGA GTGNPLFTAD TAAALRALEI NADAILKGTT DGVYDCHSRT 540 NSSVFEHISF RELASRGFTE MDMTAVTFCE ENNIPVVLFN LMEPGNISRA LCGDQVGTLV 600 DQAGSIS

Sequence ? help Back to Top

Protein Sequence Length: 607 aa Download sequence

MRHAGSGNPN PNPNADAMPM ASCDDDFALL GDEAQSQAHS QQQASAAVAA AAAAAAASVV  60
SFSTHRYMSK AAVPIHARSL PISSIASPKK GQISAIGEDE DHEGYGEAFT QTEVNHNHCF  120
ASDGHGSNPF VPPQPPENDD ADGDTESDRK FHAAAAVAST SHHHHHQQQE QQQQYASRLD  180
PKRNERDELS DGESPYGYNT GSKRSRHSSA APSSSGDYRK DREEWSDSAI GCLLDAYSEK  240
YIQLNRGNLR GRDWEDVATT VSERCEKQKS GKSVEQCKNK VDNLKKRYKV ECQRISSGNL  300
AVSHWPWFKK MEQIVGSSSS KAAPEEDRAV AVGDSSPAAK QMKRYPVNSP GSANLTNNFK  360
LKSLSNPRWK RVVLKISGVA LAGTGPQNVD PKVMMLIARE VGMANRVGVE AAIVVGGRNF  420
FCGDTWIAAT VTDRATTYQI GMMASAMNAI LLQASFEKIG IDARVQTAFT MQEIAEPYIR  480
RRAVRHLEKG RVVIFGGIGA GTGNPLFTAD TAAALRALEI NADAILKGTT DGVYDCHSRT  540
NSSVFEHISF RELASRGFTE MDMTAVTFCE ENNIPVVLFN LMEPGNISRA LCGDQVGTLV  600
DQAGSIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	0.0	Trihelix family protein