PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52337.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GRAS

Protein Properties

Length: 1361aa MW: 150588 Da PI: 7.9191

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52337.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	158.4	6.2e-49	131	499	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsel.....ykalppsetseknsseelaalkl...fsevsPilk 92 ++lL A av++ + +++q+lL l+elasp+gd+++Rla+y ++AL +r +++++ + ++al + +++++ s+e ++++ f+evsP++ PKA52337.1 131 EQLLNPLAAAVEAVNVSRIQHLLYVLQELASPAGDANHRLAFYGLQALTRRFSSTGHAIpcgspAAALFAVPQPTYASTEPKLFRSAlikFHEVSPWFA 229 689999*********************************************9766553222223343334444444444444444578***** PP GRAS 93 fshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg......skeeleetgerLakfAeelgvpfefnvl 181 f + +aN aIl+a++ + +H++D ++s+GlQWp+Ll+aL+ Rp +p + iT+ g++ + + ++ L ++A++++++++ + PKA52337.1 230 FPNCLANAAILQAAAAWragRGLHVVDVGVSHGLQWPTLLEALTRRPTAAPtVVTITVAGEELAPakgifeAAPPGYDYAPHLLRYAKSIELNLRVEK- 327 *********9987666789********************7766599*99654467788888889999*******99998886. PP GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleakl.p 276 e+ + +E l+V+ +++l r e+L+ v+++ P+++vv+e ++ F e+f+++ e+ + +++s+++ + + PKA52337.1 328 ---------GEKVERVGKEILVVCAQFRLGRAG----------AEFLRKVREMDPDLLVVSEMAdgfGGEGGLGFCEGFARKTEVLWRFLESTSVAFkG 407 .........455566689*****999997..........47*************983433346669***************777614 PP GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.....sgslvlgWkdrpLvs 369 res+er++vE e + v+ e ++Wre++ee GF++ ++e+a + + llrk++ ++++rv g + l Wk++ + + PKA52337.1 408 RESDERRVVEGE-----AARVLEEEDGV-------RRRWREKMEEEGFNEEGFGEEALEAGRGLLRKYDgGWEMRVAAAaagggGGGVGLWWKGQIVSF 494 555666666655.....66666665554.......578***************************99999999776777445555****** PP GRAS 370 vSaWr 374 +S Wr PKA52337.1 495 CSIWR 499 **8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1361 aa Download sequence
MDWLEDSISF LPTFLSEPYA VPDELARYEW WAQDQSPTPP HLQPSPAAAV AAVKPEPPTE 60 TPKSDFSRKR RLQANPASNT HRRKTEPHHR DEEEDRDLKP HVAGGKKGSG KGTSGGASSG 120 GSSGKEARWA EQLLNPLAAA VEAVNVSRIQ HLLYVLQELA SPAGDANHRL AFYGLQALTR 180 RFSSTGHAIP CGSPAAALFA VPQPTYASTE PKLFRSALIK FHEVSPWFAF PNCLANAAIL 240 QAAAAWRAGR GLHVVDVGVS HGLQWPTLLE ALTRRPTAAP TVVTITVAGE ELAPAKGIFE 300 AAPPGYDYAP HLLRYAKSIE LNLRVEKGEK VERVGKEILV VCAQFRLGRA GAEFLRKVRE 360 MDPDLLVVSE MADGFGGEGG LGFCEGFARK TEVLWRFLES TSVAFKGRES DERRVVEGEA 420 ARVLEEEDGV RRRWREKMEE EGFNEEGFGE EALEAGRGLL RKYDGGWEMR VAAAAAGGGG 480 GGVGLWWKGQ IVSFCSIWRP VLRPTPTNAA GGATGTLTHY SRRDRQITSL GRPGVHSPSR 540 ALKLCAAELR DRQHKSSFSY IRSILGIKDS QVEASEKDMD AEQEKEWLEA QNISISDDLV 600 PLALKQLEFL AAVDKRRFLY GGPILERAIR RYKTCWLPLL AWFTKSAHLE GSLVVPFDCE 660 WIWHCHRLNP VQYHRDCMEF YGRTLDCKNV QSSLQASSEN LTAGKWAKFY RDEPFELDYS 720 SPSAESKCNP HTETSSTFTY DLASAVKRQS SFYYQVCRPV MHDKRFLEGA VARYKGFLHL 780 IKRNRESSTR CFCVPTYDVD LIWHSHQLQP LSYQKDMIEL IGKILEHDDT DSDRTKGQKL 840 DVGFSETTKQ WEDTYGLRYW RAGAMYRGAA PALSVATPLL SSYDSSTPLS VCRPPISIPL 900 QRKMMVEVLL EIVGIRGLPS DHREDVFVSF GKNKPDAFLS GRCHLGISSE TGEKRVASFQ 960 CESTGVLILS VMTKSKLAKT IGTISISLEK LMDPNSNLSI EKWFDLKSHS RNANSKQIYL 1020 RVAASFTVPV PAPYVFEMVK LRPFLMNSCM FPVRNTTQLM RNCTQFIDYC GNDVITLQMR 1080 RSKEGGGSKN SLWKQRIVGI TRLSRKPSCL AYFAENTWFF NELNLSLNVD MNANQGSYEL 1140 ELKGFRQTKL LPGRKLEYYQ PRNNMPDEAD NCLTVAEFSA EYPYGKALAL FDLKSGVVKV 1200 HLFVPYKELH LYFEKHCPIF LFLPYKQISD DWFVLPATLI AFIISDLLKR GNNITFSPIF 1260 TNSVPNRRVG DPVGYDKNET SGKAVDSGSC SSGCNGGCGS GYAENSSSCG GDCGSAVQGS 1320 KGGEGSNGGG ACDAGGCGSC GSAAGGNEAN HVSSKETLVG A

Sequence ? help Back to Top

Protein Sequence Length: 1361 aa Download sequence

MDWLEDSISF LPTFLSEPYA VPDELARYEW WAQDQSPTPP HLQPSPAAAV AAVKPEPPTE  60
TPKSDFSRKR RLQANPASNT HRRKTEPHHR DEEEDRDLKP HVAGGKKGSG KGTSGGASSG  120
GSSGKEARWA EQLLNPLAAA VEAVNVSRIQ HLLYVLQELA SPAGDANHRL AFYGLQALTR  180
RFSSTGHAIP CGSPAAALFA VPQPTYASTE PKLFRSALIK FHEVSPWFAF PNCLANAAIL  240
QAAAAWRAGR GLHVVDVGVS HGLQWPTLLE ALTRRPTAAP TVVTITVAGE ELAPAKGIFE  300
AAPPGYDYAP HLLRYAKSIE LNLRVEKGEK VERVGKEILV VCAQFRLGRA GAEFLRKVRE  360
MDPDLLVVSE MADGFGGEGG LGFCEGFARK TEVLWRFLES TSVAFKGRES DERRVVEGEA  420
ARVLEEEDGV RRRWREKMEE EGFNEEGFGE EALEAGRGLL RKYDGGWEMR VAAAAAGGGG  480
GGVGLWWKGQ IVSFCSIWRP VLRPTPTNAA GGATGTLTHY SRRDRQITSL GRPGVHSPSR  540
ALKLCAAELR DRQHKSSFSY IRSILGIKDS QVEASEKDMD AEQEKEWLEA QNISISDDLV  600
PLALKQLEFL AAVDKRRFLY GGPILERAIR RYKTCWLPLL AWFTKSAHLE GSLVVPFDCE  660
WIWHCHRLNP VQYHRDCMEF YGRTLDCKNV QSSLQASSEN LTAGKWAKFY RDEPFELDYS  720
SPSAESKCNP HTETSSTFTY DLASAVKRQS SFYYQVCRPV MHDKRFLEGA VARYKGFLHL  780
IKRNRESSTR CFCVPTYDVD LIWHSHQLQP LSYQKDMIEL IGKILEHDDT DSDRTKGQKL  840
DVGFSETTKQ WEDTYGLRYW RAGAMYRGAA PALSVATPLL SSYDSSTPLS VCRPPISIPL  900
QRKMMVEVLL EIVGIRGLPS DHREDVFVSF GKNKPDAFLS GRCHLGISSE TGEKRVASFQ  960
CESTGVLILS VMTKSKLAKT IGTISISLEK LMDPNSNLSI EKWFDLKSHS RNANSKQIYL  1020
RVAASFTVPV PAPYVFEMVK LRPFLMNSCM FPVRNTTQLM RNCTQFIDYC GNDVITLQMR  1080
RSKEGGGSKN SLWKQRIVGI TRLSRKPSCL AYFAENTWFF NELNLSLNVD MNANQGSYEL  1140
ELKGFRQTKL LPGRKLEYYQ PRNNMPDEAD NCLTVAEFSA EYPYGKALAL FDLKSGVVKV  1200
HLFVPYKELH LYFEKHCPIF LFLPYKQISD DWFVLPATLI AFIISDLLKR GNNITFSPIF  1260
TNSVPNRRVG DPVGYDKNET SGKAVDSGSC SSGCNGGCGS GYAENSSSCG GDCGSAVQGS  1320
KGGEGSNGGG ACDAGGCGSC GSAAGGNEAN HVSSKETLVG A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13840.1	2e-63	GRAS family protein