PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA52080.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

ARF

Protein Properties

Length: 686aa MW: 76557.1 Da PI: 7.7736

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA52080.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.3e-23	114	215	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 f k+lt+sd+++ g +++p+ +ae++ +++ + t+ +d +g W++++iyr++++r++lt+GW++Fv++++L +gD+vvF +++++ l PKA52080.1 114 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TVLAKDVHGVIWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSVVFF--RTESGDL 208 89**************************986444444..8999*****************************************..4589999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+++r+ PKA52080.1 209 CVGIRRA 215 **997 PP
2	Auxin_resp	110.4	1.8e-36	281	363	2	83
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 ++ a+t++ Fev+Y+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+++dp+ Wp+S+Wr+L+ PKA52080.1 281 SRLAATGQEFEVIYYPRASTPEFCVKASAVRAALRIRWCSGMRFKMAFETEDSSRISWfMGTISAVHAADPLMWPGSPWRLLQ 363 67899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 686 aa Download sequence
MKEMENRLDP QLWHACAGGM VQMPSVNSKV YYFVQGHAEH AQSPADFSNS LRIPAQILCR 60 VTNVKYMADP DTDEVYAKIQ MIPFKGDEPD CCEEDDGLAL GGHGSELQEK PASFAKTLTQ 120 SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTVLAKDVH GVIWKFRHIY RGTPRRHLLT 180 TGWSSFVNQK KLVAGDSVVF FRTESGDLCV GIRRAKRGIG PEPLAGWNPS TRSCMYGGFS 240 MFLREEETKF FRGNTNAGST ISGSNVRGRV KVQVDSVIEA SRLAATGQEF EVIYYPRAST 300 PEFCVKASAV RAALRIRWCS GMRFKMAFET EDSSRISWFM GTISAVHAAD PLMWPGSPWR 360 LLQVSWDEPD LLQNVKCVSP WLVELVTSMP PMPFTPFLPS NKKPRIPQHP DFSLDFQLPT 420 PPYHGNALIP SSSPLCCLQD GNPAAGIQGT RHTQYGISRP DLHLRKLQSG MFHAGFQQLD 480 HFLPPSRIST GLIVSDSTAC EDVSCLLTLG HSPQSTKKEF SKQCNAQAHQ FMLFGKPIFT 540 EQQFSQSPNN SFDVNSEKTS NLSDVSGSAI HQNITKKNLS CEGISWFQNQ KVKELGLETG 600 HCKVFMEFED VGRTLDLSAF GSYDELYRRL ANMFGIKKSE LISRILYRDA TGVTKQTGDE 660 PFDEFMKTVR RLKILVDSGR DNMGKL

Sequence ? help Back to Top

Protein Sequence Length: 686 aa Download sequence

MKEMENRLDP QLWHACAGGM VQMPSVNSKV YYFVQGHAEH AQSPADFSNS LRIPAQILCR  60
VTNVKYMADP DTDEVYAKIQ MIPFKGDEPD CCEEDDGLAL GGHGSELQEK PASFAKTLTQ  120
SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTVLAKDVH GVIWKFRHIY RGTPRRHLLT  180
TGWSSFVNQK KLVAGDSVVF FRTESGDLCV GIRRAKRGIG PEPLAGWNPS TRSCMYGGFS  240
MFLREEETKF FRGNTNAGST ISGSNVRGRV KVQVDSVIEA SRLAATGQEF EVIYYPRAST  300
PEFCVKASAV RAALRIRWCS GMRFKMAFET EDSSRISWFM GTISAVHAAD PLMWPGSPWR  360
LLQVSWDEPD LLQNVKCVSP WLVELVTSMP PMPFTPFLPS NKKPRIPQHP DFSLDFQLPT  420
PPYHGNALIP SSSPLCCLQD GNPAAGIQGT RHTQYGISRP DLHLRKLQSG MFHAGFQQLD  480
HFLPPSRIST GLIVSDSTAC EDVSCLLTLG HSPQSTKKEF SKQCNAQAHQ FMLFGKPIFT  540
EQQFSQSPNN SFDVNSEKTS NLSDVSGSAI HQNITKKNLS CEGISWFQNQ KVKELGLETG  600
HCKVFMEFED VGRTLDLSAF GSYDELYRRL ANMFGIKKSE LISRILYRDA TGVTKQTGDE  660
PFDEFMKTVR RLKILVDSGR DNMGKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein