PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA51771.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C3H

Protein Properties

Length: 927aa MW: 103707 Da PI: 8.5892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA51771.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.1	5.4e-07	250	270	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++Cr+f++ G C++G+ C++ H PKA51771.1 250 APCRDFSA-GRCRRGSECRYLH 270 69****.*********** PP
2	zf-CCCH	26.9	8.4e-09	399	420	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 ++C+ff++ G C++G+ CkF+H PKA51771.1 399 VVPCKFFLE-GRCRRGEECKFSH 420 689****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence
MAEQARKRTS KWDVAAEPNV LTKSRHEDAL PTKVDEFPME PTKREPRNLD CNEISVLDEN 60 TTWDSANPDC NEISMLDKNK TVHSLELDSF EIDGSSQLSE RIKPNVTVPS DKNLWEMPQL 120 SKKFNQESDW DQWDDCSKNQ GWDQLSQGRM SAVGYDYKTT QGTSDVSPGP NERRKWGHKA 180 SPTGDLNGFS RSGRKRSRSW SRSRSRSRSR SRSLSYDSSR SRSWSRSPPF AAKQRVERWG 240 DKGRMKGRAA PCRDFSAGRC RRGSECRYLH ESSNRRQIDR VGPANERECR LERGRYLGYG 300 SKDSFPDSRD KMNYSRENLP RRREGHYDDV WDNNEDQRSY KFSERCYDFT RGRCHRGASC 360 RYTHDASSSD GVWSGKDDLR GKDGNAPSGQ RMEPQRFSVV PCKFFLEGRC RRGEECKFSH 420 QVGSASNSIA GSHDDSQHND AASHRCENEL RVTIDGKNFG SKTKSFSLGL EKEGHQTHNQ 480 EDHKEAVPSA LQINNLESSA GPISQVNAED TSNRKLQVEL GFANKDLQKS NIVSENVGQR 540 QETGPHIIHV QKFAPNPPFQ QFGPRAHSDG QTQFSAHYLD TSMQNTASHF PHSGPNPQNS 600 EYRGKVQHTY DLNLQIQPDL QPPLNAQSQQ GSNPGSQFHQ KILSQSGLGQ QDISVTGGDG 660 QKLLPSIQPP GPPPNRESLD LDGKMHHSCS PNNVSLMQPV LHVREDSDVK TPLFNSDNSI 720 SHKLVTSEQA AKITDLSASL AHFFGTAALN SQASTPITVP PTVPSLPSNS TPPPTNIEDS 780 EANINHLAAT APTGLDDKPH LGNREMGQIL QGGDALKNKE LPAEIQYGME VRRDGDSQKL 840 KEAKGVKMFK CALVEFVKDL LKPTWKEGQL SKEAHKTIVK KVADKVTGAL QGSNLPQTQE 900 KIDLYLSNSK SKLSKLVQAY VERYAKS

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence

MAEQARKRTS KWDVAAEPNV LTKSRHEDAL PTKVDEFPME PTKREPRNLD CNEISVLDEN  60
TTWDSANPDC NEISMLDKNK TVHSLELDSF EIDGSSQLSE RIKPNVTVPS DKNLWEMPQL  120
SKKFNQESDW DQWDDCSKNQ GWDQLSQGRM SAVGYDYKTT QGTSDVSPGP NERRKWGHKA  180
SPTGDLNGFS RSGRKRSRSW SRSRSRSRSR SRSLSYDSSR SRSWSRSPPF AAKQRVERWG  240
DKGRMKGRAA PCRDFSAGRC RRGSECRYLH ESSNRRQIDR VGPANERECR LERGRYLGYG  300
SKDSFPDSRD KMNYSRENLP RRREGHYDDV WDNNEDQRSY KFSERCYDFT RGRCHRGASC  360
RYTHDASSSD GVWSGKDDLR GKDGNAPSGQ RMEPQRFSVV PCKFFLEGRC RRGEECKFSH  420
QVGSASNSIA GSHDDSQHND AASHRCENEL RVTIDGKNFG SKTKSFSLGL EKEGHQTHNQ  480
EDHKEAVPSA LQINNLESSA GPISQVNAED TSNRKLQVEL GFANKDLQKS NIVSENVGQR  540
QETGPHIIHV QKFAPNPPFQ QFGPRAHSDG QTQFSAHYLD TSMQNTASHF PHSGPNPQNS  600
EYRGKVQHTY DLNLQIQPDL QPPLNAQSQQ GSNPGSQFHQ KILSQSGLGQ QDISVTGGDG  660
QKLLPSIQPP GPPPNRESLD LDGKMHHSCS PNNVSLMQPV LHVREDSDVK TPLFNSDNSI  720
SHKLVTSEQA AKITDLSASL AHFFGTAALN SQASTPITVP PTVPSLPSNS TPPPTNIEDS  780
EANINHLAAT APTGLDDKPH LGNREMGQIL QGGDALKNKE LPAEIQYGME VRRDGDSQKL  840
KEAKGVKMFK CALVEFVKDL LKPTWKEGQL SKEAHKTIVK KVADKVTGAL QGSNLPQTQE  900
KIDLYLSNSK SKLSKLVQAY VERYAKS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	202	210	RSRSRSRSR
2	202	212	RSRSRSRSRSR
3	204	212	RSRSRSRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	4e-15	C3H family protein