PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA51000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C3H | ||||||||
Protein Properties | Length: 510aa MW: 54674.6 Da PI: 8.3687 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.2 | 1e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtGtC yG+rC+++H++ PKA51000.1 49 PGEPDCAYYMRTGTCGYGERCRYNHPR 75 5789*********************96 PP | |||||||
2 | zf-CCCH | 40.5 | 4.4e-13 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++CkF+H++ PKA51000.1 98 QPVCEYYMKTGTCKFGSSCKFHHPK 122 689********************96 PP | |||||||
3 | zf-CCCH | 40.3 | 5.1e-13 | 142 | 167 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C++++rtG+Ck+G++CkF H++ PKA51000.1 142 GEKECSYYMRTGQCKFGSTCKFDHPQ 167 7899********************97 PP | |||||||
4 | zf-CCCH | 37.7 | 3.5e-12 | 302 | 325 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G++Ck++H+p PKA51000.1 302 LECQYYMRTGDCKFGATCKYHHPP 325 58********************97 PP | |||||||
5 | zf-CCCH | 26 | 1.6e-08 | 349 | 371 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 C ++a+ Ck+G++CkF H++ PKA51000.1 349 VCAYYAQHAACKFGPTCKFDHPM 371 7********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 510 aa Download sequence |
MDPYGRSSTV DGSRPDTDTG LEESMWRLGI GGGSGGGGGG RDFPYPERPG EPDCAYYMRT 60 GTCGYGERCR YNHPRDRGGV VGGAVWPGTV QYPERIGQPV CEYYMKTGTC KFGSSCKFHH 120 PKHGGLVQPV SLNYFGYPLR PGEKECSYYM RTGQCKFGST CKFDHPQHAS ASAPSTAPLF 180 YPSVQPPSTP SSQQYSQISG WQIGKPSSSL SGAYMPGPYG PVVISSGVVP VPGWSPYMRF 240 IMMPIVKQPP LGQNVSPGSQ QSAKTVTSVP THTGSYLSIS SSIGPSSSSR TECFFPVRPG 300 QLECQYYMRT GDCKFGATCK YHHPPDWSLP KTNCILSPLG LPLRPGAQVC AYYAQHAACK 360 FGPTCKFDHP MGSLTYSPSA SSLVDMPVAP YPIGISPPTL APSSSSTELR PDLLSNKDPF 420 SSQKPSPKES SSGYVSPLLT KGLFLPDSFI ESASHVAVSS SSSSSTKGHT GETSAQDGSL 480 IINHLSDFSS KLMKLNRVLQ VLGPSEDVLY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 1e-114 | C3H family protein |