PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA50913.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | LBD | ||||||||
Protein Properties | Length: 230aa MW: 24040.4 Da PI: 9.1454 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.9 | 7e-38 | 48 | 150 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +C aCk+lrrkCa++Cv+a +f +eq +++fa+vhk+FGasnv+kllk++p+ +r+da++++ yeA+ar++dPv G+v+++l+lq+q++ql+ael+ + PKA50913.1 48 PCGACKFLRRKCASGCVFAAHFGNEQsaAARFAAVHKVFGASNVSKLLKKVPPARRHDAVATVSYEAQARLSDPVLGCVATVLALQHQVMQLQAELSIV 146 7*********************88874469********************************************************************9 PP DUF260 98 keel 101 +++l PKA50913.1 147 QSQL 150 9985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence |
MPPSNIACRN DPSAGGKKGN TADSNTTPPR LAGAAATAGR GSTVTGAPCG ACKFLRRKCA 60 SGCVFAAHFG NEQSAAARFA AVHKVFGASN VSKLLKKVPP ARRHDAVATV SYEAQARLSD 120 PVLGCVATVL ALQHQVMQLQ AELSIVQSQL INSRLAAAGA MRYSAMPQQG LMVVRPPAPA 180 FSNSSESINN MNSKIFSLSS LEYLCDARGL ELLQLPQTAG DDGEGVEWKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 5e-59 | LBD family protein |