PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA50468.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | bHLH | ||||||||
Protein Properties | Length: 249aa MW: 27381.9 Da PI: 7.7346 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.8 | 3.9e-13 | 190 | 235 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k s a++L +Av+YIk+Lq PKA50468.1 190 SIAERVRRTRISERMRKLQELVPNM----DKQASTADMLDLAVDYIKDLQ 235 689*********************7....688*****************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence |
MSSGLLRYSS APSCLIGELC EGFFPARPSS PEAELMFTRL LDPDRRDEIG RNSQFTPCVP 60 AAVAEDPSGG FSSSSRMFYR SQRLGTGGVS GGGGGITEDS SVARCFVPAY SVSSWDDSSF 120 LSENFSPCRS TGGLNRNGEI TNQPVSGVTH HFNLPKTSSE MVALEKFFQF QDSVPCKIRA 180 KRGCATHPRS IAERVRRTRI SERMRKLQEL VPNMDKQAST ADMLDLAVDY IKDLQKQVEV 240 GKNFDFLII |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 5e-50 | bHLH family protein |