PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50325.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 341aa MW: 37529.9 Da PI: 7.0111

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	277	299	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cgk+F + L H r+H PKA50325.1 277 HECTICGKVFASGQALGGHKRSH 299 78*****************9999 PP

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence
METHCCKFCS RGFPSGRSLG GHMRSHVAMN SPLDSDGKPA TTYGLRENPK KKWRLSDNPS 60 PEKDNVKLCR KPCADLDEDF SSDGVDEERD ESEKQIDSEV TAIQVPRRRR QRRRSRRVEA 120 ISASDFLPFS SSEFEKEQED GALCLMMLSR AAGSVTDSSD LNSVILEKEE DFLRSGYRLI 180 GLKKADSGFS LDEADNDEID PADQKITSRD FGSNKRSRYL CTICNKSFHS YQALGGHRAS 240 HKKNRAADLS SESPAAVKEL NNQTARRLQA PESCSAHECT ICGKVFASGQ ALGGHKRSHV 300 ISCAIAAAAE IGKKAPKIIH LLDLNLPADE GGRDNPDGIV E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	114	RRRRQRRR
2	107	117	RRRRQRRRSRR
3	108	115	RRRRQRRR
4	109	117	RRQRRRSRR
5	109	116	RRRRQRRR
6	111	117	QRRRSRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	8e-29	C2H2 family protein