PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50206.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

Trihelix

Protein Properties

Length: 701aa MW: 75682.7 Da PI: 5.6522

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50206.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	97.2	1.5e-30	67	151	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r++m+ ++r++ lk+plWeevs+k+ e g++rs+k+Ckek+en++k+yk++keg+ +r++++s +++f+qlea PKA50206.1 67 RWPRQETVALLKIRSDMDAAFRDATLKGPLWEEVSRKLGELGYRRSAKKCKEKFENVHKYYKRTKEGRAGRQDGKS--YRFFSQLEA 151 8*******************************************************************866665..*****85 PP
2	trihelix	107.9	6.5e-34	418	503	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev+aLi++r+ me +++++ k+plWee+s+ m++ g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf+ql+a PKA50206.1 418 RWPKAEVHALIKLRSAMEGQYQESGPKGPLWEEISSGMKRLGYSRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHQLDA 503 8*******************************************************************8.99999******85 PP

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence
MQHGGGSPFG GPPPQELAPS FPGAPEAAAP ISMRPPPASG FDDMGQQAAE EEQGMAAGEG 60 SGAPGNRWPR QETVALLKIR SDMDAAFRDA TLKGPLWEEV SRKLGELGYR RSAKKCKEKF 120 ENVHKYYKRT KEGRAGRQDG KSYRFFSQLE ALNSSASSAT VTVAAGNPPL PVMASAGAAT 180 PFIISGTPGT SSRPQLLPFP TAGPTATPQL AAPAPPPMAA PGLSFSSNTS SYTGTESDDE 240 EVGEAGGGSR KRKREGGHGG GEAAKGSRKM MEFFERLMQQ VMERQEAMQQ RFLEAIERRE 300 QDRMIREEAW RRQEMSRISR EHELAAQERA AAASRDAAII NFLQKLTGQT ISFPAPPPPP 360 PSPPIPAAAA TAPIKSQSLP PPPPPPQPTP PASSEMVAIA PEPPPQAQLP LETSSSSRWP 420 KAEVHALIKL RSAMEGQYQE SGPKGPLWEE ISSGMKRLGY SRSSKRCKEK WENINKYFKK 480 VKESNKKRPE DAKTCPYFHQ LDALYRSKLH SSYRSVAAAA TSSHDLPEPE PELNSQPPQP 540 PPGLKNNETG GPTGSSTKKP AEDIVKDLME QPLMDSLDDD NVAGGDDELD EDDEEQEEED 600 GDMQFKIQFQ RPRIGGSGGG GGPAGEGNFL AMVRSSSSSS SSSLLPYIDL LWNNNEMGPA 660 GGGVAEEISH PTAESPEFGQ GFFVFLLGRL LLHRERCLWA L

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence

MQHGGGSPFG GPPPQELAPS FPGAPEAAAP ISMRPPPASG FDDMGQQAAE EEQGMAAGEG  60
SGAPGNRWPR QETVALLKIR SDMDAAFRDA TLKGPLWEEV SRKLGELGYR RSAKKCKEKF  120
ENVHKYYKRT KEGRAGRQDG KSYRFFSQLE ALNSSASSAT VTVAAGNPPL PVMASAGAAT  180
PFIISGTPGT SSRPQLLPFP TAGPTATPQL AAPAPPPMAA PGLSFSSNTS SYTGTESDDE  240
EVGEAGGGSR KRKREGGHGG GEAAKGSRKM MEFFERLMQQ VMERQEAMQQ RFLEAIERRE  300
QDRMIREEAW RRQEMSRISR EHELAAQERA AAASRDAAII NFLQKLTGQT ISFPAPPPPP  360
PSPPIPAAAA TAPIKSQSLP PPPPPPQPTP PASSEMVAIA PEPPPQAQLP LETSSSSRWP  420
KAEVHALIKL RSAMEGQYQE SGPKGPLWEE ISSGMKRLGY SRSSKRCKEK WENINKYFKK  480
VKESNKKRPE DAKTCPYFHQ LDALYRSKLH SSYRSVAAAA TSSHDLPEPE PELNSQPPQP  540
PPGLKNNETG GPTGSSTKKP AEDIVKDLME QPLMDSLDDD NVAGGDDELD EDDEEQEEED  600
GDMQFKIQFQ RPRIGGSGGG GGPAGEGNFL AMVRSSSSSS SSSLLPYIDL LWNNNEMGPA  660
GGGVAEEISH PTAESPEFGQ GFFVFLLGRL LLHRERCLWA L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-58	Trihelix family protein