PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA50088.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 564aa MW: 60097.4 Da PI: 5.0899

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA50088.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	41.4	2.6e-13	381	427	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI +Lq PKA50088.1 381 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLSDAVSYITELQ 427 799*********************6.....5***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 564 aa Download sequence
MNLWADELID SFIPSAADLH SFHWPPPTPT PPPLAADVSG SSCGSDLTST ITPYCSPDGL 60 QQHLQSLIEG ARESWTYAIF WQSSLTATAG AAVLGWGDGY YKGCDEDRRL HRGGGPEQEH 120 RRRVLRELNS LIAATADEGV DEEVTDTEWF FLISMTQSFA AGAGFPSQAL SVGEPIWVAG 180 EVQLAGAPCQ RAQQAAGFGI KTMVCIPVGD GVVELGSTAV VYQSSEILKR IRVSFNLPAH 240 PSPGSIEGFF PIVAAAPADI SDSKPQLPFE NPSSSSITQN LSIIATPPPA QNQGFSVRTL 300 NFSGGSSDEG ILSFSSAAAA GGGRRAPPLL TGADSDNSDL EASIREVESS LVLASPAAAE 360 PERRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLSDAV 420 SYITELQTKL QLLESSTESL RSQVDALKIK GADAAGSSAD GRSGRLEEVE LEVKIIGLEA 480 MIRLQSRREG HPAARLTAAI EELALDVLYA SVSVVKDLMI QQVTVRMAGC SYSQEHLNSE 540 LYSRVTGCAR AAAGAAGGHH AGSR

Sequence ? help Back to Top

Protein Sequence Length: 564 aa Download sequence

MNLWADELID SFIPSAADLH SFHWPPPTPT PPPLAADVSG SSCGSDLTST ITPYCSPDGL  60
QQHLQSLIEG ARESWTYAIF WQSSLTATAG AAVLGWGDGY YKGCDEDRRL HRGGGPEQEH  120
RRRVLRELNS LIAATADEGV DEEVTDTEWF FLISMTQSFA AGAGFPSQAL SVGEPIWVAG  180
EVQLAGAPCQ RAQQAAGFGI KTMVCIPVGD GVVELGSTAV VYQSSEILKR IRVSFNLPAH  240
PSPGSIEGFF PIVAAAPADI SDSKPQLPFE NPSSSSITQN LSIIATPPPA QNQGFSVRTL  300
NFSGGSSDEG ILSFSSAAAA GGGRRAPPLL TGADSDNSDL EASIREVESS LVLASPAAAE  360
PERRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNVSKM DKASLLSDAV  420
SYITELQTKL QLLESSTESL RSQVDALKIK GADAAGSSAD GRSGRLEEVE LEVKIIGLEA  480
MIRLQSRREG HPAARLTAAI EELALDVLYA SVSVVKDLMI QQVTVRMAGC SYSQEHLNSE  540
LYSRVTGCAR AAAGAAGGHH AGSR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	363	371	RRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	1e-121	bHLH family protein