PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49963.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

GRF

Protein Properties

Length: 657aa MW: 73135.8 Da PI: 9.0658

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49963.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	71	1.4e-22	495	538	1	43
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrs.rsrksk 43 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrg++ rsrk++ PKA49963.1 495 DPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKKnRSRKPV 538 79********************************9761555555 PP
2	QLQ	46	1.7e-16	435	461	2	28
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvP 28 +FT++Q+q+L+ Q+l+yKy+a++ P+P PKA49963.1 435 PFTPSQWQELELQALIYKYMASGIPIP 461 9*************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 657 aa Download sequence
MRTIATVDAR LRALEPSKRS SKPATKKTAD VLQKEEAGAP VVDLEVEAPP AKVARVLVRT 60 LESAQETATE EVTEVVNVFD SPVKLPLKTG ERKELIVVGE TPARKRLEPG KILLKDEDIE 120 RLFPKFGAPV EGSVKKTPLV ICGPAPLGES VLLPIKTKKP LFPRLLLTGL QNEEKDKEES 180 SKMEEEIKEK KEAPQVAPEA ALGIEGTWGV LEKSLLEIRG EEGKILKGIS QVLKVVKNLM 240 GKEGGEARFF RRIVEVESAL LQVTKYSQAR GSLICVSGKG VLYEERRGRA TPITTGAAEE 300 SSSSMIIDPG QTSGTRDRPT IVHDDPGIDL HNLGPDDTKY RLSQSASPNS ADLRTDALPH 360 KSTSIKEYHL PLSVKSQQIE KERSPALFLQ HGSQALPAAS LCLLLLTHNN GGSSLLSQIR 420 MMMMVMSERS YSRNPFTPSQ WQELELQALI YKYMASGIPI PLPLRRSFSS YLTFPPQTLV 480 GWSCYQMGYG RKAEDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK KNRSRKPVEL 540 SLAANSHTFS SSSSSSSSSP YSGRLSVSRP GFSDAPGAER ESSLQLKPLG MSSMAEANVE 600 VDNRERPMHH FFDEWPQKNM KPWMELEEDK ICYTKTQLSI SFPNWFSPFY LQNPFIC

Sequence ? help Back to Top

Protein Sequence Length: 657 aa Download sequence

MRTIATVDAR LRALEPSKRS SKPATKKTAD VLQKEEAGAP VVDLEVEAPP AKVARVLVRT  60
LESAQETATE EVTEVVNVFD SPVKLPLKTG ERKELIVVGE TPARKRLEPG KILLKDEDIE  120
RLFPKFGAPV EGSVKKTPLV ICGPAPLGES VLLPIKTKKP LFPRLLLTGL QNEEKDKEES  180
SKMEEEIKEK KEAPQVAPEA ALGIEGTWGV LEKSLLEIRG EEGKILKGIS QVLKVVKNLM  240
GKEGGEARFF RRIVEVESAL LQVTKYSQAR GSLICVSGKG VLYEERRGRA TPITTGAAEE  300
SSSSMIIDPG QTSGTRDRPT IVHDDPGIDL HNLGPDDTKY RLSQSASPNS ADLRTDALPH  360
KSTSIKEYHL PLSVKSQQIE KERSPALFLQ HGSQALPAAS LCLLLLTHNN GGSSLLSQIR  420
MMMMVMSERS YSRNPFTPSQ WQELELQALI YKYMASGIPI PLPLRRSFSS YLTFPPQTLV  480
GWSCYQMGYG RKAEDPEPGR CRRTDGKKWR CSKEAYPDSK YCERHMHRGK KNRSRKPVEL  540
SLAANSHTFS SSSSSSSSSP YSGRLSVSRP GFSDAPGAER ESSLQLKPLG MSSMAEANVE  600
VDNRERPMHH FFDEWPQKNM KPWMELEEDK ICYTKTQLSI SFPNWFSPFY LQNPFIC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	2e-45	GRF family protein