PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA49836.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family GRAS
Protein Properties Length: 484aa    MW: 54005.7 Da    PI: 6.1616
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA49836.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS454.66.1e-1391144841374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l+++L++cA+a+++++  la++l+++l++++s +g+p++Rl ay++e+L arl++s+s +ykal+++e +   sse l+++++++e++P++kf+++ aN
  PKA49836.1 114 LKQALIACARAIEENNILLAEWLMTELRQMVSVSGEPIERLGAYMVEGLVARLSSSGSVIYKALKCKEPT---SSELLSYMHILYEICPYFKFGYMSAN 209
                 6799*****************************************************************9...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI eav+ge+rvHiiDf+isqG QW++L qaLa+Rp+gpp lRiTg++++ s+  +   l+ +g+rL+ +Ae++++pfef++ ++   +++e+++Lr+
  PKA49836.1 210 GAIAEAVKGEDRVHIIDFQISQGNQWVSLVQALAARPGGPPFLRITGIDDSFSSyaRGGGLHLVGKRLSLLAESCKIPFEFHP-AVLLDSEVEINNLRI 307
                 **************************************************776688999************************.7888999******** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  pgEal+Vn+++qlh+++desvs+e++rd++L+lvkslsPkvv++veqe+++n++ Fl rf+e+l+yy+alf+s++++lpre++eri vE+++++r+iv
  PKA49836.1 308 LPGEALVVNFAFQLHHVPDESVSTENRRDRLLRLVKSLSPKVVTLVEQESNTNTAAFLPRFMETLDYYTALFESIDVTLPRENKERIHVEQHCVARDIV 406
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 nv+acegaer+erhe  +kW++r+++aGF+p+pl+  +++++k+ll+++ +  yr+ee++g+l+lgW++r+Lv+ SaWr
  PKA49836.1 407 NVIACEGAERVERHELHGKWKSRFKMAGFSPYPLNPVVNATIKSLLENYCD-KYRLEERDGALFLGWMNRALVVSSAWR 484
                 *************************************************95.5*************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    
MKESDLRRPP PNYQSSCDCS QMRKSSHQTS HVQYCTLDSS AIASYTHGSP STISSLSSDY  60
TSGSPVSASS ITEDLDDLKL KIKHLESIML GPEADAVDSL DTSRLLMEIP KGDLKQALIA  120
CARAIEENNI LLAEWLMTEL RQMVSVSGEP IERLGAYMVE GLVARLSSSG SVIYKALKCK  180
EPTSSELLSY MHILYEICPY FKFGYMSANG AIAEAVKGED RVHIIDFQIS QGNQWVSLVQ  240
ALAARPGGPP FLRITGIDDS FSSYARGGGL HLVGKRLSLL AESCKIPFEF HPAVLLDSEV  300
EINNLRILPG EALVVNFAFQ LHHVPDESVS TENRRDRLLR LVKSLSPKVV TLVEQESNTN  360
TAAFLPRFME TLDYYTALFE SIDVTLPREN KERIHVEQHC VARDIVNVIA CEGAERVERH  420
ELHGKWKSRF KMAGFSPYPL NPVVNATIKS LLENYCDKYR LEERDGALFL GWMNRALVVS  480
SAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein