PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49827.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 499aa MW: 52076.5 Da PI: 9.1595

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49827.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	54	76	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H PKA49827.1 54 FVCEICNKGFQRDQNLQLHRRGH 76 89*******************88 PP
2	zf-C2H2	10.9	0.0014	130	152	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + s+ k H +t+ PKA49827.1 130 WKCEKCSKKYAVLSDWKAHSKTC 152 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 499 aa Download sequence
MTVSNSASGD AGVSSGQQPT APPTKKKRNL PGMPDPDAEV IALSPKSLLA TNRFVCEICN 60 KGFQRDQNLQ LHRRGHNLPW KLRQRTGKEV RKRVYVCPEP SCVHHDPSRA LGDLTGIKKH 120 FCRKHGEKKW KCEKCSKKYA VLSDWKAHSK TCGSREYRCD CGTLFSRRDS FITHRAFCDA 180 LAEETAMTQT AVASPATAVQ REIKETKVAL PVAFMYQRMK AAPPPELHEP LEKLAEVLQD 240 MPPATASISL NSSNSSGSCI SGSTTPTSVF AGIFPSSVSA ATTQGTSLSG AMKPAGRGRN 300 VVGAGAALEP PLLCLSSNAS ASLFPLPPEG RPPPSAHMSA TALLQKAAQM GSVASSSSFL 360 RGFGLVTSSS TTAAADLQWC NQHQKSLEPP ESTLIPAGLG LGLPYEKGGG SAATAGLPEL 420 LMGSSSLFGS KPATVDFLGL GMGPTGAATA GGLSALITSI SGGMEMCPAE AVGCYGGGSS 480 PSGKVLSGAD RKHCSHAIL

Sequence ? help Back to Top

Protein Sequence Length: 499 aa Download sequence

MTVSNSASGD AGVSSGQQPT APPTKKKRNL PGMPDPDAEV IALSPKSLLA TNRFVCEICN  60
KGFQRDQNLQ LHRRGHNLPW KLRQRTGKEV RKRVYVCPEP SCVHHDPSRA LGDLTGIKKH  120
FCRKHGEKKW KCEKCSKKYA VLSDWKAHSK TCGSREYRCD CGTLFSRRDS FITHRAFCDA  180
LAEETAMTQT AVASPATAVQ REIKETKVAL PVAFMYQRMK AAPPPELHEP LEKLAEVLQD  240
MPPATASISL NSSNSSGSCI SGSTTPTSVF AGIFPSSVSA ATTQGTSLSG AMKPAGRGRN  300
VVGAGAALEP PLLCLSSNAS ASLFPLPPEG RPPPSAHMSA TALLQKAAQM GSVASSSSFL  360
RGFGLVTSSS TTAAADLQWC NQHQKSLEPP ESTLIPAGLG LGLPYEKGGG SAATAGLPEL  420
LMGSSSLFGS KPATVDFLGL GMGPTGAATA GGLSALITSI SGGMEMCPAE AVGCYGGGSS  480
PSGKVLSGAD RKHCSHAIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-105	C2H2 family protein