PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA49723.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | YABBY | ||||||||
Protein Properties | Length: 200aa MW: 22250.1 Da PI: 8.8144 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 136.1 | 4.3e-42 | 1 | 142 | 1 | 162 |
YABBY 1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 +d++ss+e++Cyv+C++Cnt+lav vP l+ +vtv+CGhC +l + + + l+a ++++++ ++ + s ss+ PKA49723.1 1 MDLVSSTEHICYVRCAYCNTVLAVGVPCRRLMDTVTVKCGHCNHLSFL--SPRPVLQAH---------------YSEHQMAFQDPCNDCRKGQFSASSS 82 57899*************************************886553..333222222...............2223333333333333333333333 PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162 ++s+ e+++++p v++PPek+ r Psaynrf++eeiqrika+ Pdi hreafs+aaknWa PKA49723.1 83 SIST---EQSSKAPYVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPHREAFSMAAKNWAK 142 3444...455666789*********************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MDLVSSTEHI CYVRCAYCNT VLAVGVPCRR LMDTVTVKCG HCNHLSFLSP RPVLQAHYSE 60 HQMAFQDPCN DCRKGQFSAS SSSISTEQSS KAPYVVKPPE KKHRLPSAYN RFMREEIQRI 120 KAAKPDIPHR EAFSMAAKNW AKCDPRGSSS TTNANTDNST GTLRTLTFHH DRGNGFAVES 180 IDVFKTNGAP ELANFPTRSP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69180.1 | 9e-52 | YABBY family protein |