PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49666.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 476aa MW: 51459.4 Da PI: 4.7816

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49666.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.5e-09	275	322	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq PKA49666.1 275 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 322 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence
MEKEAFVGSP AGLNWQMLSA DAAAPKPGMS SGYLNINWEQ TIDQSAQFES ALSSLVSSPS 60 SNTPAAGAGE SVVIRELIGR LGNICNSGEI SPPPSRYNSC YSTPLNSPPK LNLSMTGNPA 120 APACHLPFAC DPCFGERAAR FPSYGGSGHL SRVSSSQSLK ALEESSASRG VPAGHGNGKK 180 RKAVPKGKGK EASSSSTITA VANPPKTAGE NAIAKRSKDS EAVETDKGSI KPMPEEEEDA 240 ATKKKKKQEE ESSKPPEPSK DYIHVRARRG QATDSHSLAE RVRREKISER MKFLQDLVPG 300 CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNQRLD LPVDNFFPKD LLPPQAVYPL 360 ETPSSSLSFG NETQGASTTA NGLELPFPVS HSLQLPPIEG YFDSSPQLGA LWDDDLHTVV 420 QMGFSQAQEN VFSSQSFQGS EVEEEEEEEE EEEEELMNLF YGLAGYLPTN QMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence

MEKEAFVGSP AGLNWQMLSA DAAAPKPGMS SGYLNINWEQ TIDQSAQFES ALSSLVSSPS  60
SNTPAAGAGE SVVIRELIGR LGNICNSGEI SPPPSRYNSC YSTPLNSPPK LNLSMTGNPA  120
APACHLPFAC DPCFGERAAR FPSYGGSGHL SRVSSSQSLK ALEESSASRG VPAGHGNGKK  180
RKAVPKGKGK EASSSSTITA VANPPKTAGE NAIAKRSKDS EAVETDKGSI KPMPEEEEDA  240
ATKKKKKQEE ESSKPPEPSK DYIHVRARRG QATDSHSLAE RVRREKISER MKFLQDLVPG  300
CNKVTGKAVM LDEIINYVQS LQRQVEFLSM KLATVNQRLD LPVDNFFPKD LLPPQAVYPL  360
ETPSSSLSFG NETQGASTTA NGLELPFPVS HSLQLPPIEG YFDSSPQLGA LWDDDLHTVV  420
QMGFSQAQEN VFSSQSFQGS EVEEEEEEEE EEEEELMNLF YGLAGYLPTN QMKIEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-73	bHLH family protein