PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA49583.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

MYB_related

Protein Properties

Length: 442aa MW: 49816.5 Da PI: 8.3645

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA49583.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	21.9	4.1e-07	334	381	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 WT +E lv++v+ +G g+W+ I + +R+ ++k++w+++ PKA49583.1 334 TWTVDEVSNLVEGVATYGVGRWSQIRQVTFaaySHRSSVDLKDKWRNL 381 7**********************998778999**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MAADVPSSNH PELSDVCAPS PFSACSEPAK MDISEVGGRS IYETYTDSMP DFSLLKGEVC 60 LDNFTIRELQ EAFRATFGRQ TSVKDKLWLK RRIAMGLTNS CEIPSTNFII KDSKIVLINV 120 NEEASIRTPT KQYGCGFESV EVASTLLNET SREALICTVD KKEEQQVLSC ERPKKLLEEC 180 NADVENNQLE ENGSKRTRKP TKRYIEEISV VETRECSGRV ASSGNSNTRV QPALKSRIRT 240 NCSIISRPCS FVGLDMRIPS VARVRRRPPR RNFSNLVNFV KMESDKKDTQ VLNSDHQPPQ 300 KQQEDEVPVA DTININSEAV QMVMASVSKK HHRTWTVDEV SNLVEGVATY GVGRWSQIRQ 360 VTFAAYSHRS SVDLKDKWRN LVRASFAYER DGRGGGSSRK PTCMPIPEPL LLQVRDLAEK 420 HSQSKMELDE KRAKCRVHPE NL

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MAADVPSSNH PELSDVCAPS PFSACSEPAK MDISEVGGRS IYETYTDSMP DFSLLKGEVC  60
LDNFTIRELQ EAFRATFGRQ TSVKDKLWLK RRIAMGLTNS CEIPSTNFII KDSKIVLINV  120
NEEASIRTPT KQYGCGFESV EVASTLLNET SREALICTVD KKEEQQVLSC ERPKKLLEEC  180
NADVENNQLE ENGSKRTRKP TKRYIEEISV VETRECSGRV ASSGNSNTRV QPALKSRIRT  240
NCSIISRPCS FVGLDMRIPS VARVRRRPPR RNFSNLVNFV KMESDKKDTQ VLNSDHQPPQ  300
KQQEDEVPVA DTININSEAV QMVMASVSKK HHRTWTVDEV SNLVEGVATY GVGRWSQIRQ  360
VTFAAYSHRS SVDLKDKWRN LVRASFAYER DGRGGGSSRK PTCMPIPEPL LLQVRDLAEK  420
HSQSKMELDE KRAKCRVHPE NL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G17460.1	4e-55	MYB_related family protein