PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA49500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 257aa MW: 28917.9 Da PI: 4.6867 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.6 | 1.2e-19 | 41 | 94 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++++ e++ ++A+ lgL+ rqV vWFqNrRa++k PKA49500.1 41 KKRRLSVEQVRALEKNFEVENKLDPERKIRIAHDLGLQPRQVAVWFQNRRARWK 94 56689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.4 | 7.2e-42 | 40 | 132 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqv++LE++Fe e+kL+perK ++a++LglqprqvavWFqnrRAR+ktkqlE+d++aL+++ydal+++ e+L++++++L +e++e PKA49500.1 40 EKKRRLSVEQVRALEKNFEVENKLDPERKIRIAHDLGLQPRQVAVWFQNRRARWKTKQLERDFAALRSNYDALAADCESLRRDKAALLAEITE 132 69*************************************************************************************999976 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence |
MRRPRARSLD SEAGGQELFG VEEEGEEDLF SGGSPGPASE KKRRLSVEQV RALEKNFEVE 60 NKLDPERKIR IAHDLGLQPR QVAVWFQNRR ARWKTKQLER DFAALRSNYD ALAADCESLR 120 RDKAALLAEI TELKSKLGEA VETTEEESES KAGASGDAPP VTKVAAPARY KDGSSDSDSS 180 AVIYDENSPY QAGIPTPPEL CRRPDELQRV VAGGCFDFQP GSEWRAERCF FPKEEQTFLT 240 GEEPCHDFFS WYSDHWS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 97 | RRARWKTKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G40060.1 | 2e-50 | HD-ZIP family protein |