PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA49155.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 247aa MW: 26765.4 Da PI: 8.495 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.9 | 3.3e-12 | 61 | 107 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr++l + +K +Ka+ L +Ave +++L PKA49155.1 61 RNHREAEKRRRERIKSHLDRLRSILSCD-----PKTDKASLLAMAVERVREL 107 78***********************998.....7*************99988 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence |
MYRRPPDAHD ASNRRPPELT PAVAVSLPSY LMASFFPMDV ATAAAGSAAD PPADRALTAS 60 RNHREAEKRR RERIKSHLDR LRSILSCDPK TDKASLLAMA VERVRELKQR TAEIAQAHFF 120 PTETDEIIVL PGTHNSVSDD SGSGPPAAAV FEASLCCEDR SDLLPELIET LRALRMRTLR 180 AEMATLGGRV RNVLVLAKEK DEEYAGSESS GDGGGLLREA LRAVVSRAPL AGGERAKRRK 240 MIDGGGA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41130.1 | 3e-32 | bHLH family protein |