PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PKA48429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
|
||||||||
Family | YABBY | ||||||||
Protein Properties | Length: 219aa MW: 24639.1 Da PI: 8.6199 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 212.7 | 1.2e-65 | 19 | 188 | 6 | 170 |
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas..qllaae..shldeslkee..lleelkveeenlksnvekeesastsvss 98 seq+Cyv+CnfC+t+lavsvP +slfk+vtvrCGhCt+llsvn++ l+ +hl+ + + +el ++ +l+ + ++ s++ + PKA48429.1 19 PSEQLCYVHCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSVNMRGLLshPFLSPLphNHLSLFRLATfpQDQELSHSPPSLTPDQAIPNTDSAKGTD 117 68******************************************9987633233333013333333333334444444444554444444444444333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + + ++ v r v PekrqrvPsaynrfik+eiqrika+nPdi+hreafsaaaknWahfP+i fgl PKA48429.1 118 -HEELPHHPVVNRREFVGAAPEKRQRVPSAYNRFIKDEIQRIKAGNPDITHREAFSAAAKNWAHFPHIQFGL 188 .2244555566666667789**************************************************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence |
MSSSSSAAFS HLDHLSPPPS EQLCYVHCNF CDTVLAVSVP CSSLFKTVTV RCGHCTNLLS 60 VNMRGLLSHP FLSPLPHNHL SLFRLATFPQ DQELSHSPPS LTPDQAIPNT DSAKGTDHEE 120 LPHHPVVNRR EFVGAAPEKR QRVPSAYNRF IKDEIQRIKA GNPDITHREA FSAAAKNWAH 180 FPHIQFGLMP DQSIKKTIRQ QVIKLDEKKK ELFYIKSLF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45190.1 | 3e-59 | YABBY family protein |