PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PKA48285.1
Organism
Apostasia shenzhenica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
Family C2H2
Protein Properties Length: 268aa    MW: 28581.3 Da    PI: 7.3021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PKA48285.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05100122123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 ++C++Cg+ F ++  L  H++ H
  PKA48285.1 100 FSCNYCGRKFYSSQALGGHQNAH 122
                 89*****************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MTSTLTPPMK EENQPSAAAA EPCLSDASSI SFPDSRGRHR VESELIEYQQ EKTPAGLTTA  60
VELDLISSLS ATGSLLAEIP RLPQPPAAPA AAAEEAPRVF SCNYCGRKFY SSQALGGHQN  120
AHKRERSLAK RGRGSAAPAT ALPAVAGRYP PLHAWRPLGI QAHSMIHKQY HGAAAGVMVD  180
HGGWWQPPAL AGEVQQPAVG RLLMEEYSSG MLVASRMPAV VKLEDPPAFP TGGAGDISAG  240
GFRYRWMSSG DLLHDEKEKA NVDLSLRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-24C2H2 family protein