PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48251.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

bHLH

Protein Properties

Length: 623aa MW: 70921.2 Da PI: 5.0473

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48251.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.4	6.1e-14	442	489	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++h ErrRR+++N++f Lr+l+P+ + K++Ka+iL ++eY+k+L+ PKA48251.1 442 ANHVLSERRRREKLNEKFLILRSLVPSiS------KVDKASILADTIEYLKELE 489 579999*******************66......**************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MAVEIQSQEE VHENQFRRQL AACVRSIQWS YAIFWSLSTS QEGLLEWSDG YYNGDIKTRK 60 TTQPTECKAE QLGLQRSEQL RELYESLSTG DGNQQTKRPS ASLSPEDLTD AEWYYLVCMS 120 FTFNMGQDLP GKALERNEPI WLSNAQFADN RSFCRSLLAK TVVCLPFMDG VLELGTSGLV 180 LEDSGFMHNI TTSFWEIQVS DFSEHSISSP LAVGNEHVNV RTIRDHEVDD TMMFENHGLI 240 MEDGSPTYPF SFHSNALNKE AEIINDETAE HHQSIFKEIL GTTDDSSNVR ENPFRIEQQN 300 ELTNGCASWS FTHNILSSPK GERVRNNMLG NPQEEDLAKF GALGFEADGS HYASTISAIL 360 RNLKPQTSLP CFALHNVSRD SGFKIWTKDS NTLKGFSRSS QKILKKVLMG KNWLNGGRFG 420 KHQEESVPRN KACKSEVDDA NANHVLSERR RREKLNEKFL ILRSLVPSIS KVDKASILAD 480 TIEYLKELER RVEELEYGRE EEDPDIRERR KHPDITERTS DNYGNNELIN CQKPSTNKRK 540 ACEIEEVEGE YNSVFDINVT MLDKEVLVEM HCTWRDFLLL DIIEAMSNLR LDTHSVQSST 600 VNGALSITLR AKVRNNRSST EIA

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MAVEIQSQEE VHENQFRRQL AACVRSIQWS YAIFWSLSTS QEGLLEWSDG YYNGDIKTRK  60
TTQPTECKAE QLGLQRSEQL RELYESLSTG DGNQQTKRPS ASLSPEDLTD AEWYYLVCMS  120
FTFNMGQDLP GKALERNEPI WLSNAQFADN RSFCRSLLAK TVVCLPFMDG VLELGTSGLV  180
LEDSGFMHNI TTSFWEIQVS DFSEHSISSP LAVGNEHVNV RTIRDHEVDD TMMFENHGLI  240
MEDGSPTYPF SFHSNALNKE AEIINDETAE HHQSIFKEIL GTTDDSSNVR ENPFRIEQQN  300
ELTNGCASWS FTHNILSSPK GERVRNNMLG NPQEEDLAKF GALGFEADGS HYASTISAIL  360
RNLKPQTSLP CFALHNVSRD SGFKIWTKDS NTLKGFSRSS QKILKKVLMG KNWLNGGRFG  420
KHQEESVPRN KACKSEVDDA NANHVLSERR RREKLNEKFL ILRSLVPSIS KVDKASILAD  480
TIEYLKELER RVEELEYGRE EEDPDIRERR KHPDITERTS DNYGNNELIN CQKPSTNKRK  540
ACEIEEVEGE YNSVFDINVT MLDKEVLVEM HCTWRDFLLL DIIEAMSNLR LDTHSVQSST  600
VNGALSITLR AKVRNNRSST EIA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	448	453	ERRRRE
2	449	454	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.1	1e-112	bHLH family protein