PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48225.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

C2H2

Protein Properties

Length: 472aa MW: 51414.2 Da PI: 8.1377

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48225.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H PKA48225.1 77 FICEVCNKGFQREQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	13.4	0.00023	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k++ +s+ k H +t+ PKA48225.1 153 WRCEKCSKRYAVQSDWKAHSKTC 175 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MAAASSSSPF FSIKAEESFN QLKPPPSPPP QPPLPSSSTN PQDAAPVKKK RNLPGNPNPD 60 AEVIALSPRT LLATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKSA KEARRRVYLC 120 PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWRCEKCSK RYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR RDSFVTHRAF CDALAQESAR LPAGLSSIGS HLYSSNNAAL GFIDDQQMIT 240 HQPFNSLTHL PDLRSNSDTS PAANPFNLGF FYSCSSDSGN QFYAGNAYSD ILTGGQMAGE 300 MRPLFSTAVL HNESANLPQM SATALLQKAA QMGAAASSHG AGGSTSAMLP GFGGSSSGSM 360 KIWRSSQDIM NSINASGESG EEAKFGEVYG GFCNADEQGF QRQGFTRDFL GVGSLLREIG 420 GGMLSHNDDD DDNINNNNNN NNRIDVGSMD HEMKSASAGR SFEGRSLLYE EN

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MAAASSSSPF FSIKAEESFN QLKPPPSPPP QPPLPSSSTN PQDAAPVKKK RNLPGNPNPD  60
AEVIALSPRT LLATNRFICE VCNKGFQREQ NLQLHRRGHN LPWKLKQKSA KEARRRVYLC  120
PEPSCVHHDP SRALGDLTGI KKHFCRKHGE KKWRCEKCSK RYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR RDSFVTHRAF CDALAQESAR LPAGLSSIGS HLYSSNNAAL GFIDDQQMIT  240
HQPFNSLTHL PDLRSNSDTS PAANPFNLGF FYSCSSDSGN QFYAGNAYSD ILTGGQMAGE  300
MRPLFSTAVL HNESANLPQM SATALLQKAA QMGAAASSHG AGGSTSAMLP GFGGSSSGSM  360
KIWRSSQDIM NSINASGESG EEAKFGEVYG GFCNADEQGF QRQGFTRDFL GVGSLLREIG  420
GGMLSHNDDD DDNINNNNNN NNRIDVGSMD HEMKSASAGR SFEGRSLLYE EN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-113	C2H2 family protein