PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PKA48081.1

Organism

Apostasia shenzhenica

Taxonomic ID

1088818

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia

Family

TCP

Protein Properties

Length: 258aa MW: 26333.6 Da PI: 10.7855

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PKA48081.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	121.1	1.3e-37	47	135	3	92
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 +k+ + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++ +as++ ++ s +s++s +g++++ PKA48081.1 47 VKRPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTVPASFStSSTSLRSTSS--AAGASST 135 68999**********************************************************9999988832222222222..1112222 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MIRASAASPP SPSLPHSQTA ILEMTAGGAA AADGGERSNG ASAAVVVKRP PAKDRHSKVD 60 GRGRRIRMPI ICAARVFQLT RELGHKSDGQ TIEWLLRQAE PSIIAATGTG TVPASFSTSS 120 TSLRSTSSAA GASSTSPEPS QTLVPAPFIL GRRRLSDNHD YAGCPSACPP GFWAVPAARS 180 DFGQMWSFTA PDLIMAPSGI AGRFAGGSQT VGEASAARVG NYLPVTQGHL NLLASLSGGP 240 VAAAAAAAAA GSRERDHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-65	TCP family protein