PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PKA47813.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Apostasioideae; Apostasia
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Family | C2H2 | ||||||||
Protein Properties | Length: 228aa MW: 23996.2 Da PI: 5.4574 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.2 | 0.00012 | 62 | 80 | 3 | 21 |
ETTTTEEESSHHHHHHHHH CS zf-C2H2 3 CpdCgksFsrksnLkrHir 21 C Cg+ F+++ L H+r PKA47813.1 62 CYVCGRQFPTQKALFGHMR 80 99****************8 PP | |||||||
2 | zf-C2H2 | 14.2 | 0.00013 | 122 | 144 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C ++F+++ L H +H PKA47813.1 122 YVCGECRRVFPSRQALGGHRASH 144 9***************9999888 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MSAPSGDPPK PPPSASSGAG GQRGKRPLVL PNSSSSSTDD DRNGNNTGGP SAAPAAPPLP 60 ACYVCGRQFP TQKALFGHMR CHPEREWRGV RPLPEGEGSS APAREEQEEE EGSGGDHQGE 120 EYVCGECRRV FPSRQALGGH RASHRGVMGC SARAKEATAA AAAAAEETTT GGRLLRDRGV 180 SIREQGGSSS AVGRRGLPVD LNLPPPPEEE EEEEKEEEGQ KEVKEGRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 4e-19 | C2H2 family protein |